The berries were crushed by hand and filtered to obtain must

Conversely, in under cropping, where there is excessive vigor or reduced crop level, this is not necessarily deleterious for speed of ripening . However, it may be a wasteful management of resources if there is not a trade-off with farm-gate prices. Given the later fruit development of grapevine and the grape chemistry requirements for red wine making , the length of the growing season is often a limitation for achieving the desired ripening and vintage quality in cool climates . Thus, yield is often sacrificed to balance source-to-sink ratio in favor of accelerated fruit ripening or to mitigate the effects of early fall frosts . Although the initial control of crop level comes during pruning , the number of dormant buds retained at pruning time is maintained constant through the years in warm climate regions. Cluster thinning is a management practice fine-tuned each year to achieve vine balance . Excess vine vigor was linked to deleterious effects on berry flavonoids . This effect could be exacerbated with high nitrogen amounts inhibiting anthocyanin biosynthesis , the absence of water stress, or changes of cluster microclimate due to mutual shading , and thus, not by the under cropping itself. Therefore, growing blueberries in containers grapevine canopy development is managed through the control of inputs, vine spacing, irrigation, rootstocks, pruning, leaf removal, hedging, or cover crops, among others.

A great part of the carbon assimilated through the growing season is incorporated into cellulose or lignin in roots, trunks, and shoots . However, resumption of a new season’s growth depends on the carbon stored as nonstructural carbohydrates, majorly in the form of starch, but also soluble carbohydrates such as sucrose, glucose, and fructose . Roots are the greatest sink of non-structural carbohydrates and root-derived carbohydrates constitute the principal reserve source for annual resumption of growth in the spring. The grapevine’s capacity for replenishment of these carbohydrate reserves increases at mid-ripening, when canopies are at their maximum and fruit demand slows down sugar accumulation in perennial parts . Therefore, the loss of photosynthetically active leaf area or excessive number of clusters may impair the reconstitution of reserves . In addition, high crop levels may delay fruit maturation and shorten the post-harvest period and subsequently reduce the time needed to accumulate reserve carbohydrates. Grape growing systems based on high yields are typically in warm to hot regions, relying on early harvest to replenish these reserves. However, it is common that excessive yields lead to a reduction in yields the following season . Loss of photosynthetically active leaf area or excessive number of clusters may deplete these reserves. High crop levels may reduce the reserve carbohydrate accumulation and delayed fruit maturation and may shorten the post harvest period. Therefore, the grapevine may not have sufficient time to accumulate carbohydrates for the following season in cool climates. Conversely, there is not consensus in literature regarding the effect of high cropping levels on storage reserves .

This was explained by sink limitation as the grapevine was able to maintain equilibrium by adjusting physiological processes . In addition to the modulation of berry ripening and storage reserves, other compensatory mechanisms have been described in response to over and under cropping. Components of yield, which include clusters per vine, berries per cluster, and berry mass, are susceptible to change together with berry ripening in compensation of each other . Although grapevine pruning, canopy, and crop load management are the most frequently reported case of study for source-to-sink ratios, most studies may not offer direct observations , enough combinations, duration of the study, or range of source-to-sink ratios to respond to some fundamental questions. The aim of this study was to determine the in-season and carryover effects of carbon source and sink imbalances in grapevine. Specifically, we investigated the combined effects of defoliation and fruit removal on components of yield, canopy area, and seasonal integrals of leaf gas exchange, shifts in phenology, carbohydrate, and soluble sugar concentration in the roots.The experiment was conducted at the University of California Davis, Oakville Experimental Vineyard from 2017 to 2019 over three growing seasons. Eight-year-old Vitis vinifera “Cabernet Sauvignon” Clone FPS08 grafted on 110 Richter rootstock were used. Plants were trained to a bilateral cordon, manually pruned to 24 buds. The shoots were vertically shoot positioned. Row and vine spacing was 2.4 × 2.0 m, respectively, and rows were oriented Northwest to Southeast. The plants were drip-irrigated with two pressure compensating emitters per plant delivering 2.0 L/h each. The plants were irrigated from fruit-set to end of harvest at 0.5 of crop evapotranspiration replacement as previously reported .The experimental design was a factorial arrangement of treatments. There were three levels of manual defoliation by three levels of manual fruit removal applied . The treatments were applied as follows. Leaves were removed on every shoot in an alternating pattern.

For instance, 66% of leaf treatments retained leaves in positions 1st, 2nd, 4th, 5th, 7th, 8th etc. while 33% of leaf treatments kept leaves in positions 1st, 4th, 7th, etc. in every shoot . The fruit removal treatments retained a percentage of clusters after standardizing the cluster numbers in each year. Each treatment combination was replicated four times and each treatment-replicate consisted of three experimental units. In 2017, all vines were standardized at fruit set to 20 shoots and 30 clusters per vine, and laterals were removed prior to defoliation and fruit removal treatments. In 2018, all vines were standardized to 24 shoots and 45 clusters and laterals were removed prior to treatment application. Treatments were applied at pepper-corn size . In 2019, after two seasons of growth under the nine combinations of treatments, the carryover effects were studied by leaving all vines untreated . For each experimental unit one vine was shoot thinned to 24 shoots, and others were left unmanaged . All clusters at pepper-corn size in all treatment-replicates were dipped in a 5.5% kaolin solution to provide protection from the afternoon sun due to the row orientation of the vineyard in every year of the experiment.Leaf gas exchange was measured bi-weekly in all years of the experiment with an infra-red gas analyzer . Three sun-exposed leaves were selected from the main shoot axis in each experimental unit, and three readings were taken from each leaf. Gas exchange measurements were taken when the sunlight conditions were close to saturating levels in all instances. The relative humidity was set at 40%, the reference CO2 concentration was set at 400 µmol CO2 mol−1 as the standard environmental condition setting in CIRAS-3. Net carbon assimilation rate and stomatal conductance were obtained. To express the season-long response of AN, and gs , their integrals were calculated by using natural cubic splines for plant water status and gas exchange measurements to assess the cumulative values for these parameters over the whole experiment period during the growing season. Then, these cumulative values were normalized as divided by the number of days elapsed between the first measurement date and the last measurement date to make the data comparable to each individual measurement.After harvest, leaves from one vine per replicate were collected, weighted, square pots and dried in a forced-air oven at 80◦C for 3 days. Dry leaf weights were converted into area by measuring the area of a subsample of 50 random leaves with a leaf area meter as reported previously . On 12 December 2018, after the second season of treatments, one vine per experimental unit of the most extreme treatments were pruned, coppiced, and the root systems were removed with a back-hoe. The sectioned grapevine portions were weighed on a top loading scale, and dried in a forced-air oven at 60◦C until no weight change of tissue was detected. At harvest , clusters were removed, counted, and weighed for each plant in the experiment. Total soluble solids were measured from 55 berries collected randomly at harvest point. A digital refractometer was then used to measure total soluble solids of must.Soon after the harvest of 2017 was completed, root tissues were sampled every 2 months.

The top layer of soil was removed until the roots were visible. Each grapevine root zone was divided into four quadrants and on each date and one single quadrant was sampled, leaving the other 11 quadrants undisturbed. Roots were gently cleaned with water, freeze-dried, and ground to a fine powder with a tissue lyser . Thirty milligrams of the resultant powder were extracted in 80:20 ethanol solution. A 1.5 mL aliquot of the extract was then placed in a 90◦C water bath for 10 min, then centrifuged at 10,000 rpm for 1 min. The supernatant was collected for total soluble sugars determination. The same procedure was repeated for starch determination, in which the pellet was collected for its determination. Total soluble sugars in the roots were determined as reported elsewhere by Torres et al. . Briefly, the 1.5 mL sample was filtered by PTFE membrane filters and transferred into high performance liquid chromatography vials. Equipment consisted of a reversed-phase HPLC system Agilent 1100 coupled to a diode array detector and an Agilent Infinity Refractive Index Detector . The reversed-phase column was Luna Omega Sugar with a guard column of 5 mm. The temperature of the column compartment was maintained at 40◦C and the RID flow cell was kept at 35◦C. The mobile phase system consisted in an isocratic elution with acetonitrile:water at a flow rate of 1.0 mL•min−1 with a run time of 22 min. Standard solutions of 10 mg/L of D-glucose, D-fructose, D-sucrose, and D-raffinose were injected to obtain the retention time for each compound, and detection was conducted by RID. Sugar standards were purchased from VWR . Sugar concentration of each sample was determined by comparison of the peak area and retention time with standard sample curves. Starch content of roots was measured using the Starch Assay Kit SA-20 following the manufacturer’s instructions. Briefly, pellets of root tissues were dissolved in 1 mL DMSO, and incubated for 5 min in a water bath at 100◦C. Starch digestion was started by adding 10 µL α- amylase and incubated in boiling water for another 5 min. then, the ddH2O was added to a total volume of 5 mL. Then, 500 µL of the above sample and 500 µL of starch assay reagent were mixed and incubated for 15 min at 60◦C. Negative controls with the starch assay reagent blank, sample blank, and glucose assay reagent blank and positive controls with starch from wheat and corn were performed. Reaction started with the incubation of 500 µL of each sample and 1 ml of glucose assay reagent at 37◦C and was stopped with the addition of 1 mL of 6 M Sulfuric acid after 30 min. Reaction was followed with analytical measurements with a Cary 100 Series UV-Vis Spectrophotometer and starch content expressed as mg of starch per tissue dried weight.The same grapevines were measured on each date throughout the execution of the experiment. Season-long measurements of root starch and soluble sugars, and phenology were analyzed separately for each year via three-way ANOVA for a date × defoliation × fruit removal design using PROC MIXED procedure of SAS using REPEATED option for measurement dates. Measurements of season-long leaf gas exchange integrals, grapevine vegetative growth, yield and yield components, and total soluble solids variables were analyzed via three-way ANOVA for year × defoliation × fruit removal using the same procedure of SAS. Whenever the year and treatment interactions were significant the analyses was conducted by year. Post-hoc analyses were conducted using Tukey’s HSD at p < 0.05. The trend analysis was carried to the quadratic level and was conducted with planned orthogonal contrasts using PROC GLM procedure of SAS. Certain variables were log transformed based on most-likelihood analysis.In our experiment the results indicated that there was an interaction of year and defoliation on cluster weight, berries per cluster and yield per vine . When we analyzed the data by year, the effect of defoliation was clearer. In both experimental years , there was a strong linear trend of defoliationon all components of yield except for cluster number; which was only affected by the fruit removal treatments. In 2017 defoliating 66% of the leaves resulted in an 8% decrease in berry weight.

SA level and pathogenesis-related gene expression increase for systemic acquired resistance

All of the leafroll viruses selected for this study belong to the Closteroviridae family and all but one belong to the Ampelovirus genus; GLRaV-2 belongs to the genus Closterovirus. All of the GLRaVs used in this study contain a conserved replication gene block but are diverse outside of the RGB . In addition to host genotype and environment, the sequencespowdery and downy mildew in grapevine . The abundance of these genes varies among Vitis species and are particularly dense at resistance loci . The HR to viruses is mediated by resistance genes. HR is a means of prohibiting pathogen spread and can confer resistance when a corresponding dominant avirulence protein is produced by the pathogen . However, GLRaV infections are systemic and persist over time, and SA does not seem to play a preeminent role in the response to GLRaV infections. In a previous study of GLRaV-3 infections in Cabernet Sauvignon and Carmenère, the authors also remarked on the induction of expression of defence genes but their inability to impede systemic infection . Both SA and ABA can participate in the response to viruses, gallon pot though considerably less is understood about the role of ABA and its relationship to NBS-LRRs.

Notably, however, ABA deficiency is associated with an increase in R gene efficacy in incompatible interactions with Pseudomonas syringae and in a manner independent of SA . Hormones have been implicated in mediating defence- and development-related networks and are over-represented at network hubs . Hormones like ABA, SA, and JA act as important signalling molecules during ripening and defence. The pathways engaged under stress are often tailored to particular pathogens. This entails coordination between hormone pathways . Interestingly, the effects of GLRaVs on gene expression in several hormone signalling pathways differed between rootstocks. A subsequent effort could be made to measure the abundances of hormones not quantified here, like cytokinins, GAs, and ethylene. Of the hormones considered in this study, however, the abundance of ABA and ABA-GE tended to increase in GLRaV and this was influenced by rootstock. ABA can antagonize SA and JA signalling pathways and suppress ROS signalling . WRKY transcription factors regulate and/or are regulated by ABA, SA, and JA . SA and ABA both can interact with RNAi, which is a fundamental component of antiviral defence. AGO1 expression is positively correlated with ABA levels and the expression of miR168a, which regulates AGO1, and contains ABREs in its promoter . Levels of ABA and ABA-GE increase in tobacco mosaic virus-infected leaves. One way in which ABA might aid plant defence is by increasing callose deposition to impair virus movement ; a gene encoding callose synthase is upregulated in the leaves of grapevine virus B-infected plants .

Relatively more is known about ABA’s function as a ripening promoter , in response to drought stress , and in transmitting long-distance signals from roots to aerial organs and vice versa . In a study of the impact of GLRaV-3 infection, drought stress, and a combination of both on grapevine plantlets in vitro, individual stresses both induced increases in ABA levels . Drought stress increases ABA levels and induces the flavonoid pathway in both tea plants and grapes . Our findings, in which ABA abundance tends to increase in GLRaV , are different than that observed for red blotch virus-infected berries, in which ABA abundance and NCED expression decrease in infected fruits . The results of our analysis of metabolites associated with the phenylpropanoid and flavonoid pathways are mixed in their consistency with previous work. Though non-significant decreases in anthocyanin levels were observed, anthocyanin levels significantly increased in several GLRaV conditions, albeit usually in individual years. These findings differed from others; some observed significant decreases in anthocyanin levels in fruits from GLRaV-infected plants and others observed no significant changes in anthocyanin at harvest . In agreement with the results by Vega et al. , flavonol levels were elevated in GLRaV and the largest differences versus GLRaV occurred at the first two stages, FLS expression was downregulated in GLRaV at harvest, and CHS and MYBPA1 were upregulated at véraison and generally downregulated at harvest. In the present study, changes in the abundance of ABA and related metabolites distinguished the effects of GLRaVs between rootstocks. The parentage of the two rootstocks used in this study,Kober 5BB and MGT 101-14, includes Vitis riparia. The other parents of Kober 5BB and MGT 101-14 are Vitis berlandieri and Vitis rupestris, respectively.

These rootstocks were developed at different times. MGT 101-14 originated in France in 1882 and Kober 5BB originated in Austria in 1930 . Rootstocks are chosen for the advantages they confer to the scion given a particular set of circumstances, often having to do with resistance to Phylloxera, nematodes, scion vigour, soil type, and abiotic stress tolerance . V. riparia, V. rupestris, and V. berlandieri are asymptomatic hosts of GLRaVs . Yet, the particularly severe response to GLRaV-1,2 was not entirely unexpected in Kober 5BB-grafted vines . It would be interesting to determine whether differences in viral titre exist between Kober 5BB, MGT 101-14, and Cabernet Franc and between different infection conditions and whether such differences, if they exist, influence the severity of leafroll disease. Differences in wood abnormalities given different rootstocks have been observed for particular isolates causing grapevine rugose wood disease . Notably, nutritional deficiencies in phosphorus, magnesium, and potassium produce symptoms that resemble those typically observed in GLRaV-infected plants . Magnesium deficiency tolerance , the impact of phosphorus deficiency on canopy growth , and potassium uptake and channels are influenced by rootstock . Potassium uptake, channel activity, and related gene expression are also regulated by ABA , and the application of ABA to tomato roots by drip irrigation affects fruit mineral composition . Furthermore, elevated levels of potassium are observed in leafroll virus-infected Burger and Sultana fruits and in leaf petioles but potassium levels are lower in leaf blades . Perhaps potassium deficient and GLRaV phenotypes are similarly governed by ABA and fine-tuned by rootstocks. If some portion of scion ABA originates in roots and/or if rootstock can influence scion ABA levels and signalling genes, as observed here and by others , then perhaps this partially accounts for the variation in response observed between rootstocks. This experiment did not include a comprehensive survey of phytohormones, which would be beneficial, but ABA’s function in root–shoot communication, its role in ripening, and the results here make it a good candidate around which to study the basis of leafroll disease symptom variability going forward. In addition, the transport of RNAs across the graft junction may perform some function that affects scion disease severity, but this remains to be seen in the particular case of GLRaV . Together, these data support several conclusions. The majority of genes differentially expressed as a consequence of infection or between GLRaV plants with different rootstocks were yearspecific. A small subset of effects was consistently observed across experimental conditions and in both years. These shared changes in expression involved genes associated with pathogen detection, ABA signalling and transport, ROS-related signalling, gallon nursery pot cytoskeleton remodelling, vesicle trafficking, phenylpropanoid metabolism, sugar transport and conjugation, and leucine biosynthesis. The impacts of GLRaV-1,2 dual infection on Kober 5BB-grafted vines were the most distinctive and severe. Though there was variation between GLRaV infections observed, only the effects of GLRaV-1,2 were distinguishable overall from those of other infections. The particular effects of GLRaVs in plants grafted to different rootstocks were distinguishable overall at every developmental stage. ABA-related variables were among those that best distinguished the responses to GLRaVs in different rootstock conditions. This included the abundance of ABA, the abundance of ABA-GE, and the expression of genes associated with ABA and other hormone signalling pathways.

Finally, this work alone is insufficient to recommend the use of one rootstock or another, but the disparity in sensitivity and symptom severity observed in berries from Cabernet Franc vines grafted to different rootstocks suggests that rootstock selection should be further explored as a strategy to mitigate some of the negative consequences of leafroll virus infections, should vectors of the virus encroach upon a vineyard.The experimental vineyard used in this study was established in 2010 and consists of Cabernet Franc clone 04 grapevines grafted on different rootstocks and infected with zero, individual, or pairs of GLRaVs. The rootstock portion of these plants was inoculated with chip buds carrying each virus in 2009 . All rootstocks and Cabernet Franc scions were tested for grapevine pathogens. Total nucleic acid extracts were prepared from all rootstocks and Cabernet Franc scions as described by Al Rwahnih et al. . Extracted TNA samples were analysed by reverse transcription quantitative PCR using TaqMan probes on the QuantStudio 6 Flex Real-Time PCR System as described previously . The samples were screened for the following pathogens: GLRaV-1, GLRaV-3, GLRaV-4 ; GLRaV-2 ; GLRaV-7 ; grapevine fleck virus ; grapevine rupestris vein feathering virus ; grapevine fanleaf virus, tobacco ringspot virus, and tomato ringspot virus ; grapevine virus A, grapevine virus B, grapevine virus D, grapevine virus E, and grapevine virus F ; grapevine red blotch virus ; and grapevine rupestris stem pitting-associated virus , phytoplasmas, and Xylella fastidiosa. In autumn 2008, Cabernet Franc grapevines were bench-grafted onto rootstocks, including MGT 101-14 and Kober 5BB. These plants were subsequently grown in a greenhouse. Between 2009 and 2011, the rootstock portions of these plants were inoculated with two chip buds from single leaf roll-infected plants. Infected plants used for chip buds were reconfirmed by RT-qPCR. Plants infected with a single species of GLRaV received two identical chip buds. Plants infected with two species of GLRaVs also received two chip buds, each carrying a single virus. Plants infected with GLRaV-1, GLRaV-2, and/or GLRaV-3 were inoculated with two or more isolates of each species of GLRaV. The inoculated plants were kept in a greenhouse for approximately 1 month, acclimatized, and then planted in the field. Healthy controls included nonchip budded plants and plants chip budded from a healthy source. The vines were planted in a randomized complete block design, with 7 feet between vines and 9 feet between rows. One group of five vines was planted per rootstock × infection condition in each of three blocks. Healthy vines were distributed throughout each block to monitor the spread of viruses, and experimental vines were sampled yearly to test and reaffirm the vines’ infection status. A buffer zone of healthy vines was planted as a barrier between the leafroll vineyard and other vineyards in the area. Vines were trained with a bilateral cordon and spur pruned.High-quality genomic DNA was isolated from grape leaves using the method described in Chin et al. . SMRTbell libraries were prepared for Cabernet Franc clone 04 as described by Massonnet et al. . Final libraries were evaluated for quantity and quality using a Bioanalyzer 2100 and sequenced on a PacBio RS II . De novo assembly of Cabernet Franc clone 04 was performed using FALCON-Unzip as described in Minio et al. . Repetitive sequences were masked before and after read error correction using the TANmask and REPmask modules in Damasker . Contigs were polished with Quiver . The primary assembly was scaffolded to reduce sequence fragmentation. First, primary contigs were scaffolded with SSPACE-LongRead v. 1.1; . Junctions supported by at least 20 reads were allowed. Hi-C data and the proprietary HiRise software were used for hybrid scaffolding. A Dovetail Hi-C library was prepared by Dovetail Genomics as described in Lieberman-Aiden et al. and sequenced on an Illumina platform, generating 2 × 150-bp pairedend reads. The repeat and gene annotation were performed as reported in Vondras et al. . Briefly, RepeatMasker and a custom V. vinifera repeat library were applied to identify repetitive elements in the genome. Publicly available data sets were used as evidence for gene prediction. Transcriptional evidence included Vitis expressed sequence tags, Cabernet Sauvignon corrected Iso-Seq reads , Tannat , Corvina , and Cabernet Sauvignon transcriptomes , and previously published RNA-Seq data . Swissprot Viridiplantae data and Vitis data were used as experimental evidence. Each RNA-Seq sample was trimmed with Trimmomatic v. 0.36 , assembled with Stringtie v. 1.3.3 , and mapped onto the genome using Exonerate v. 2.2.0 and PASA v. 2.1.0 . Alignments and ab initio predictions generated with SNAP v. 2006-07-28 , Augustus v. 3.0.3 , and GeneMark-ES v. 4.32 were used as input for EVidenceModeler v. 1.1.1 . EVidenceModeler was used to identify consensus gene structures.

Cooling is by far the best technology for increasing the shelf-life of horticultural produce

Grafting can increase overall plant vigor and yield in the absence of disease or other stress, but studies in California focusing on grafting for increasing yield have found both increases and occasional decreases in yield when grafted to fresh market tomatoes . Therefore, absent developments that reduce the costs of these inputs, grafting is currently not economically feasible for processing tomato production in California. In addition to economic challenges with grafting, we encountered cultural issues with grafting in our experiments. Notably, we observed that the grafted and the tall grafted plants can outgrow the scion. The plants in the greenhouse and the field developed shoot growth from the rootstock, particularly in the tall grafted plants, likely due to the higher number of nodes on its rootstock stem compared to the standard grafted plants. This overgrowth was especially prevalent in 2019, in which a month after planting in the field, outgrowths of Maxifort were observed to emerge from the soil in between the grafted transplants. The different procedure used by the nursery to produce the transplants in 2019 compared to 2018 may explain the greater incidence of overgrowing the scion. Thus, black plastic pots for plants while the grafted plants reduce southern blight incidence, overgrown plants develop an undesirable taller vegetative canopy and produce unwanted fruit of the rootstock.

Although statistical and numeric trends suggest that increasing the height of the graft union may reduce southern blight incidence, the magnitude of this difference is small and not likely to make a practical difference in commercial production. The tall grafted plants did not develop as much southern blight as the non-grafted plants, but there are additional cultural issues with using the resistant rootstock in a processing tomato field such the risk of transplants breaking at their union while being transplanted or quickly after transplanting. Therefore, increasing the height of the graft union is likely not an economical approach for processing tomato production. We found a range of variation in susceptibility to southern blight among commercial cultivars. One Heinz cultivar was promising in 2018, although it developed disease in 2019. In 2019 one Harris Moran cultivar showed promise in its resistance to southern blight, but it was not evaluated in 2018 due to poor germination. We found the breeding lines reported by Leeper et al. 1992 to also perform well in one replicate year in greenhouse conditions, therefore these breeding lines may be beneficial for southern blight resistance breeding for California processing tomatoes. However, three of the breeding lines performed similarly to two Heinz and one Nunhmens cultivars that are already planted in the southern San Joaquin Valley. The cultivars that performed well in our experiments may have lower susceptibility to southern blight compared to other cultivars and thus may be options for growers to plant in fields with a history of southern blight.While results from the cultivar experiments were promising, cultivars could not be separated easily when evaluating their risk of developing disease.

The disease risk ranking of some cultivars changed drastically between the two experimental replications: a few cultivars with low risk in 2018 developed more disease in 2019 and vice versa, but several cultivars were in the highest risk tier in both years. Although cultivars were difficult to separate, the study in 2019 developed more disease than the study in 2018. This may have been due to excessively high irrigation pressure in two blocks of the 2018 study that is suspected to have washed the inoculum out of pots, resulting in minimal disease development. Further evaluation of these cultivars in the greenhouse and the field is needed to confirm these findings. Disease incidence was low overall in the greenhouse grafting studies, especially in HZ 8504 compared to HZ 5608. This may be due to our experimental setup in which plants were trellised because of space constraints on the greenhouse bench. When plants were trellised, the stem did not branch near the soil line, and vegetative tissues did not touch inoculated soil, while in the field the vegetative canopy is at risk of coming into contact with sclerotia in the soil. The utility of greenhouse experiments for evaluating the effect of grafting on southern blight may be limited. These studies showed promising results for the management of southern blight in California. Based on our studies, the approach of grafting for management of southern blight may not be the best application. The use of resistant cultivars is a better and accessible approach for California processing tomato growers.

We recommend the development of field studies to evaluate the promising cultivars in the greenhouse under natural conditions.Raspberry fruit are produced on a perennial shrub belonging to the vastly diversified Rubus genera of the Rosaceae family. There are mainly two types of raspberries: red and black. Yellow raspberries are a mutated version of red raspberries that prevents the formation of red color . Purple raspberries are a hybrid between black and red raspberries. Raspberries are an aggregate fruit, a combination of individual drupelets that stay together with the help of an invisible hair-like structure. Each small drupelet is developed from a carpel, a significant characteristic of Rubus, where the mesocarps become fleshy and the endocarps become hard and form a tiny pit that encloses a single seed within each drupelet. . The drupelets separate from the receptacle at harvest, creating a hollow, thimble-shaped fruit.The primary planting material for raspberries is the cane. Cane traditionally refers to aerial raspberry shoots but also often refers to rooted suckers . Raspberry plants generally start fruiting in the second year and can continue up to 15 years if properly managed. However, the canes are biennial. Usually, the cane grows in one year and fruits the next year. Canes sprouting in the first year are called primocanes , and in the second year are called floricanes . Both canes are present during the growing season . Primocane-fruiting types can produce two crops per year; onein the summer from the floricanes and the other in the fall from the primocanes. With the onset of cold temperatures, floricanes often go into a period of dormancy. Six weeks or more at 4℃ or lower is required to break dormancy. After fruiting, the entire cane senesces and dies. When second-year canes are flowering, first-year canes are growing from the crown or roots. Like other brambles, raspberry is a self-pollinated species . Fruit development occurs for 30-36 days in most cultivars . The best yields take place under sunny, cool summer conditions . Recently, the use of the high tunnels has extended the berry cultivation season both at the beginning and the end. This extension enables growers to gain more profit from the market as berry prices are usually higher during early and late seasons . Like all crops, water is very important for raspberry production. According to Prange and DeEll , lack of water can affect the production and quality of berry fruit after harvest. However, excessive water, mostly due to high rainfall during the fruit growing period, drainage pot made raspberries more susceptible to mechanical damage during transportation and storage .The red raspberry is believed to have originated in Turkey’s Ide mountains. The Romans may have expanded raspberry cultivation throughout Europe. However, the British improved and popularized raspberries throughout the middle ages and had the plant exported to New York by 1771 . In the early 1900s, raspberry cultivation got its momentum, and in 1920, New York State growers harvested more than 10,000 acres of raspberries. In 2018, there were three major raspberry production regions: Russia, Europe , and the Pacific Coast of North America . World raspberry production has grown 80% over the last 10 years. From 2010 to 2019, production increased from 373,000 tons to 684,000 tons. . In 2020, the total area under raspberry cultivation in the United States was 16,900 acres producing 111,000 tons of raspberries valued at US$469 million. In California, there were 8,000 acres, valued at US$395 million for fresh raspberries only. Canada is the biggest importer of US raspberries, and in 2021, Canada imported a total of 24,400 tons of fresh raspberries valued at $154 million from the US .

A fruit’s quality is generally assessed based on its visual appearance, texture, flavor, and nutritional compounds . Raspberry quality and shelf life can be adversely affected by a variety of pre-harvest and post harvest factors. Pre-harvest factors include genetics, environment, and cultural practices. Postharvest factors such as handling, transportation, storage temperature, condition and duration, relative humidity also play important role on maintaining raspberry fruit quality. Raspberry is renowned for its aroma and flavor. Raspberry is a non-climacteric fruit and their taste and flavor mostly develop while they are ripening on the plant. The ratio of sugar and organic acids determines raspberry taste . Soluble solids from 9 to 10% and titratable acidity from 1.5 to 1.8% constitute good raspberry taste according to De Ancos . Wang et al. evaluated raspberry fruit harvested at 5%, 20%, 50%, 80% and 100% ripe and they concluded that berries that were 50% to 80% ripe developed the same degree of SS, TA, and sugars as berries that were 100% ripe, whereas berries that were 5 to 20% ripe neverattained those properties. There are many volatile compounds, notably, α and β-ionone, linalool, α and β-pinene, caryophyllene and citral, contributing to raspberry flavor . Berry purchases are linked to several factors, the most important being freshness and origin, while price does not play a significant role . Visual quality is also very important for raspberry and a good indicator of shelf life. Brighter color without any visible decay and leakiness is perceived as fresher. Krüger et al. categorized raspberries in three groups based on their ripening stage; semi-ripe, ripe and over-ripe. They concluded that semiripe raspberries were potentially more suitable for shipping while maintaining acceptable sensory quality .Consumers have always been concerned about food quality and appearance, in general. However, consumer preference has been shifting toward fruit flavor and nutritional qualities, including their composition and level of bioactive compounds, such as vitamins, minerals, fiber, and even phenolic compounds . Raspberry fruit are 85- 90% water, ~9% SS and the remaining are insoluble solids. Raspberry fruit contain 13.6–31.1 mg/100 g Vitamin C and 0.2–83.6 mg/100 g anthocyanins . These compounds vary by cultivar, harvest time, cultural practices, environment and weather conditions . Raspberry fruit also contain a broad range of polyphenolic compounds; phenolic acids, flavanols, anthocyanins, proanthocyanidins, and ellagitannins . These compounds have been extensively studied for their antioxidant capacity and impact on human health . High antioxidant capacity is believed to contribute to health benefits by ameliorating the detrimental effects of reactive oxygen species generated in the body through oxygen metabolism . Berry polyphenols also have been shown to protect against ROS-induced neurological diseases such as Alzheimer’s , and red raspberries have been reported to have a neuroprotective effect . However, the impact of raspberry fruit’s high antioxidant capacity might be limited by very low uptake into the bloodstream from dietary intake . Nonetheless, they could have beneficial effects on the gastrointestinal tract as they pass along the digestive system, thus preventing oxidation from foods already in the stomach and GIT or by affecting food digestion, glucose levels, and calorie usage . In addition, raspberry contains a significant amount of ellagitannins; a large group of polyphenols that are beneficial to fight cervical cancer, cardiovascular disease, and diabetics .Raspberries have a short shelf life of 2 to 5 days because of their natural soft texture and sensitivity to mold and other pathogens. Postharvest handling and storage conditions, including packaging, relative humidity, temperature, and light, can affect the bioactive compounds in brambles . Low temperatures slow pathogen growth and reduce the rate of deterioration of freshly harvested commodities, thus extending shelf life and the marketing period . The recommended temperature for raspberry storage is 0-1℃ , but it is challenging to maintain this recommended temperature during transportation and marketing. Although low storage temperatures can slow the development of Botrytis cinerea infections, they do not provide adequate control when pathogen inoculum loadsare high . Acidity and SS as well as pigment compounds such as anthocyanins play an important role in berry marketability after storage , and the presence of light and temperature during storage might affect anthocyanin compound stability .Modification of storage or transport atmospheres help maintain raspberry shelf life and quality.

The primocane stage is critical for healthy establishment of the raspberry crop

Karp et al. estimated 4–12 birds/ha of species that are confirmed or suspected CBB predators. Flocks of migratory birds on coffee farms are estimated at 19/ha and 24/ha , but these values are also short of our estimates of necessary densities for suppressing larger CBB outbreaks. One caveat to our conclusions is that our calculations were based on CBB accounting for 5%–10% of a bird’s daily diet . This assumption meant birds would only eat a set maximum of 7 CBB per day. Sherry et al. reported up to 116 CBB in the stomach contents of a single warbler, suggesting under certain circumstances in the field, birds eat more CBB. Generalist insectivores, particularly Neotropical migrants, have flexible foraging preferences and would likely feed opportunistically on CBB in response to dramatic dispersal peaks. Therefore, birds might be expected to increase feeding rates as CBB disperser abundances increase, though it may depend on the relative abundances of other prey. Better data on CBB consumption rates by birds under different circumstances would improve our estimates of the circumstances under which birds can control CBB populations.

A second caveat is that bird densities used in the model may not represent the potential for CBB control because bird densities depend on the structure of the agricultural landscape, pot with drainage holes which the current model does not consider. On coffee farms, birds are more abundant when native tree cover is highest and natural forests are close by . Across tropical and temperate regions, the propensity for birds to forage on farms, and thus exert pressure on agricultural pests, is correlated with the physical complexity and diversity of the agroecosystem . For example, birds make more frequent foraging trips to apple orchards with high native tree coverage . In alfalfa fields, edge habitat complexity supports greater avian richness leading to lower pest abundances . Under some circumstances, the density of birds foraging in certain areas may be higher than average densities would imply, leading to greater control potential than our models suggest. More generally, our CBB population model is density independent and assumes environmental conditions and sufficient resources to allow CBB populations to increase without restriction. As a result, our model is limited, as it does not consider localized effects of weather and temperature fluctuations on CBB developmental time , nor characteristics of coffee farms that influence both CBB infestation and bird density. We assumed maximal capacity for CBB population growth and used estimates of bird densities from the literature that only included birds known to consume CBB, perhaps underestimating the potential for avian control.

Models are an important tool for estimating population dynamics, but as with any species, the growth potential for CBB and availability of its predators, is context dependent. Our study echoes Kendall et al.’s conclusion that, even though errors in model construction are common, these seldom change qualitative conclusions. From our population matrix, CBB daily growth rate converged on λdaily = 1.042 around day 124, with an observed rate of population change across the entire coffee-growing season of 705 . Our λdaily is higher than Mariño et al.’s reported lambda of 1.32 over  50– 56 days, which corresponds to λdaily ≈ 1.006 . Part of this discrepancy may come from the fact that Marino et al. combined vital rates across life stages with different time steps. Nonetheless, both models are consistent in predicting rapidly growing populations. Observed CBB population growth rates are similar to ours: Baker, Barrera, & Rivas, calculated a 1.067 growth rate in wild populations and RuizCardenas and Baker reported 1.047 in CBB reared in laboratory settings. In their sensitivity analysis, Mariño et al. reported that adult female survival, and transitions from larva to pupa and pupa to juvenile had high sensitivity in contributing to population growth rate, with adult survival the highest . We found a similar peak sensitivity value for female adult survival in our matrix , supporting the idea that CBB population growth is most sensitive to adult survival rate. Interestingly, dispersal survival from our matrix was estimated to have low impact on population growth , even though this life stage is when CBB are vulnerable to bird predation.

Thus, our analysis superficially suggests that population control once CBB are established should focus on reducing adult survival rather than on trapping dispersing females , if the same impact on numbers could be achieved. However, dispersing females are much more accessible to control methods like spraying fungal bio-insecticide than are adult females, which are inside the coffee cherries, so despite the tremendous difference in sensitivity values, management of an established population is likely to be more cost effective by continuing to focus on dispersing females . Population models specific to CBB have been criticized for not being representative of wild populations, since more generations are estimated through modeling than are observed in field studies . We analyzed CBB population growth using a deterministic model, with an even distribution of dispersal and a fixed predation pressure. While CBB dispersal is continuous, there can be dramatic intraseasonal peaks in numbers that were not captured by our model . In addition, reported longevity of female CBB varies widely from 55 to 380 days, though some studies looked at CBB reared on artificial diet . Refinements of survival in natural settings would, therefore, improve models of CBB population growth, and the potential for control by birds. If field data on CBB vital rate stochasticity become available, and bird densities opportunistically increase during CBB peak numbers, it could affect our conclusions about the capacity of birds to control larger CBB outbreaks. Based on our analyses, there is a population density of CBB above which their capacity to produce more adults exceeds the ability of birds to control their numbers, at least to limit the population size by 50%. This positive density-dependent relationship between population growth and density is an Allee effect , and escape from predation is one mechanism for this phenomenon . In general, predator-driven Allee effects can occur when predators are the main driver of prey dynamics and when predators are generalists as are insectivorous Neotropical migrants . Additionally, large pot with drainage predators can exert strong pressure when prey availability is not temporally or spatially limited—a potential limiting factor in the coffee system, since CBB are only available to birds during dispersal. The degree to which birds exert an Allee effect on CBB might depend on the starting population size of the pest. Variation in starting population size is likely dependent on how recently CBB have colonized in an area, timing of trapping , the size of the farm , and the extent to which farmers used control measures the previous year . We found that only under very low initial population sizes of CBB could birds be expected to suppress pest numbers by 50%. We note that earlier, stronger CBB suppression by birds would lead to lower infestation numbers later in the coffee season, but this might require selective foraging by birds, depending on relative abundances of other prey species. In conclusion, our models suggest that birds can control CBB under some circumstances, depending on the relative size of the starting CBB population and existing local bird density. To put this idea into practice it is important to remember that managing farms for bird habitat does not always result in pest reduction. Birds may not prey on the pest of interest or birds might cause pest numbers in increase by preying on insect predators that normally regulates the pest population . Aside from predators, pest species are also impacted by the agricultural environment directly . In fact, on coffee farms where bird densities are higher in shade, CBB infestations are also higher , possibly because CBB native range is in humid, shade forests of Africa .

It is important that future modeling include such habitat-specific factors to understand Our research helps quantify the densities under which birds have the potential to control CBB populations. Putting these numbers into practice will require understanding how manag Raspberries are an important crop for California, where it is among the top 20 commodities with an average annual value of $448 million from 2015 to 2017 . Maintaining a high yielding, disease-free crop has been difficult due to low availability of farm workers to harvest and maintain the fresh market raspberry canopies. As a method to adjust to their limited field workers, some growers in California began experimenting with new cultural practices, such as pruning leaves near the base of the canes. In Ventura County, the common pruning practice is to remove mature and senescent leaves using the twine that is part of the trellis. The influence of these experimental cultural practices on incidence and severity of cane Botrytis is not known. Managing B. cinerea cane and fruit infections during this early period can be important for reducing severe epidemics during the rest of the crop. The first chapter focuses on our studies that evaluate the influence of pruning leaves on incidence and severity of cane Botrytis. In the previous decades, soil borne diseases were commonly managed with the use of chemical fumigation, but the widening restrictions on the use of fumigants in the San Joaquin Valley of California has posed a challenge for growers. The California processing tomato industry averaged $1.1 billion in value from 2013 to 2017, and accounted for 93% of the production in the United States in 2017 . Southern blight is a soil borne disease of processing tomato that has long been an economic concern in the San Joaquin Valley, and recently caused a widespread epidemic in both the San Joaquin and Sacramento Valleys . The threat of southern blight has caused reductions in acres planted with processing tomato in the southern San Joaquin Valley . The objectives of the second chapter were to: evaluate susceptibility of commercial processing tomato cultivars to southern blight; and evaluate grafting and increased height of the graft union with the resistant rootstock Maxifort for southern blight management in processing tomato.Raspberries are an important crop for California, where it is among the top 20 commodities with an average annual value of $448 million from 2015 to 2017 . This represented 82% to 88% of the domestic raspberry production. The four California counties where raspberry is produced are Ventura, Santa Cruz, Santa Barbara, and Monterey. Specifically in Ventura and Santa Cruz counties, raspberries are among the top commodities . On the West Coast of the United States, raspberry is typically produced in two stages from a single planting that is grown for a maximum of two years. In the primocane stage or first year cycle, harvest generally begins four months after planting of bare root transplants and continues for approximately three to five months. After harvest, the primocane growth is pruned near the last fruiting lateral or is mown at the soil line. The growth that follows this pruning begins the floricane stage or second cycle, which has a harvest period that generally begins three to four months after pruning and can last approximately four months. In Ventura County, a crop can be planted during four periods throughout the year: early spring, late spring, mid-summer, or late summer. The ascomycete fungal pathogen Botrytis cinerea Pers.:Fr causes multiple diseases of raspberry. The first is grey mold or Botrytis fruit rot, a widespread and damaging disease of fruits and flowers of many hosts including raspberry . The second is cane Botrytis, a disease of the raspberry cane that was first reported in England in 1931 . Cane Botrytis is reportedly more severe on red raspberry canes compared to other Rubus spp. . Cane botrytis is known to more commonly affect the floricane stage in the U.S. Pacific Northwest , but in coastal California and in eastern Canada B. cinerea causes disease primarily to the primocane stage of raspberry . Managing B. cinerea cane and fruit infections during this early period can be important for reducing severe epidemics during the rest of the crop. For example, a study evaluating B. cinerea conidia dispersal in raspberries showed locally-produced inoculum was important for controlling fruit infections . New raspberry plantings are often established next to older plantings where mummified fruits, damaged canes, and dead plant debris potentially colonized by B. cinerea sclerotia are prevalent . These infected debris from older plantings are an important source for primary spore inoculum . Resting mycelia and sclerotia can also be found on weeds .

We observed A. sericeasur utilizing vegetation connections on every vegetation treatment plant

The power system of our current device, i.e., outlet, is not ideal for most standard incubators, because it requires cords coming out of the incubator and causes a concern on maintaining the environmental parameters inside an incubator. To address these issues, the loading device could have its own built-in source of power such as a battery. The battery should be able to provide enough power that allows the device to run for the full duration of the study that could last from weeks to months. Considering that the standard environment inside an incubator involves heat and humidity, a proper shield system would have to be incorporated to protect the battery and electrical components. Third, down scaling the overall size of the device is another important aspect of future improvement, because smaller size would allow the device to be more portable and easier to be placed inside a standard incubator. As aforementioned, large pot with drainage the hydraulic pistons and the battery can significantly reduce the overall size of the device due to the smaller size of each component and elimination of using an air compressor.

Other electrical components, such as the Arduino Uno and Raspberry Pi, can be integrated into one to reduce the overall size as well. The possible drawback of these improvements is the increased cost for the device. The current first-generation loading device was designed and built with a small budget of a few hundred dollars, and demonstrated its functionality successfully in studying the degradation of Mg rods in rSBF under load.Agricultural intensification simplifies ecosystems through management practices such as increases in agrochemical use, decreases in habitat complexity, and decreases in crop and vegetation diversity . Agricultural intensification alters functional biodiversity;in particular, reductions in habitat complexity impact the arthropod community composition, decrease arthropod diversity and reduce pest control services. Notably, biological pest control is likely the ecosystem service most affected by biodiversity loss at the local scale. In coffee agroecosystems, management intensification alters habitat complexity by impacting vegetation connectivity and structure.

The management intensification gradient ranges in coffee systems from the least intensive traditional shaded “rustic system”, in which coffee grows under a diverse closed canopy of native forest, to the most intensive “sun monoculture”, which refers to rows of open unshaded coffee monoculture, that require high inputs of agrochemicals. On the shaded end of the intensification gradient, shade coffee habitats are naturally vegetatively complex, with diverse and dense shade canopies and vines and weeds that form connections between the shade trees and the coffee plants. This vegetation connectivity is an important aspect of habitat complexity that impacts species interactions at the local scale. However, while progressing along the management intensification gradient, reductions in habitat complexity, driven by decreases in shade trees, increases in herbicide use, and the clearing of vegetation between coffee plants, reduce vegetation connectivity and alter species interactions within ecological communities and the ecosystem services that they provide. Connectivity is one physical component of habitats that has a profound impact on arboreal insects and ant community structure. In the absence of connectivity, trees are insular habitats with crown isolation that inhibits the movement of some taxa .

Connectivity in the form of lianas and nylon ropes shape the local community structure of arboreal ants, with higher ant species richness often occurring in trees that are connected artificially or vegetatively as compared with trees without these physical connections, and higher ant species coexistence occurring in trees with higher levels of naturally occurring canopy connectivity. These results also reflect the nature of ants as highly efficient foragers, known to use branches and lianas as “opportunist walkways” that provide the quickest foraging routes by allowing for faster traveling speeds through avoiding obstacles on the ground, even if these routes are not necessarily the shortest distance. The variation in texture of natural walkways, characterized as “surface roughness”, further impacts both arboreal and ground ant running speeds and foraging efficiency. Physical connections between trees are thus important structures that facilitate not only arboreal ant mobility but also their foraging success, resource recruitment efficiency, and ant-provided ecosystem services, including pest removal. Ants play an important role in the control of the coffee berry borer , the most damaging insect pest of coffee. In particular, the aggressive arboreal ant Azteca sericeasur nests in shade trees, forages on coffee shrubs, and is a keystone predator that controls the CBB. Like many arboreal ants, A. sericeasur prefers walking on branches and vegetation to avoid traveling on the ground. Given the role of A. sericeasur as a biological control agent, understanding how connectivity at the local scale impacts these ants has potential implications for coffee agroecosystem management. In Chiapas, Mexico, Jiménez-Soto et al. found that artificially increasing connectivity between A. sericeasur nests and coffee plants by tying jute string between ant nest trees and coffee plants increased the capacity for A. sericeasur to remove the CBB by throwing them off the coffee plants. These results suggest that naturally occurring vegetation connectivity might have a similar effect as that of artificial string connectivity on A. sericeasur activity and their associated pest removal services. Our study tests and expands on this hypothesis by examining the impact of both artificial connectivity and naturally occurring vegetation connectivity on A. sericeasur activity, its ability to recruit to resources, and its removal of the CBB with a manipulative experiment. Specifically, we tested the following hypotheses: We predicted that the coffee plants with vegetation or artificial connections to the ant nest tree have higher A. sericeasur activity than that of the isolated control plants; A. sericeasur ants recruit to resources more efficiently on coffee plants with vegetation or artificial connections to the nest tree; coffee plants with vegetation or artificial connections to the nest tree have greater CBB removal rates by A. sericeasur ants; and A. sericeasur activity, resource recruitment rates, and CBB removal rates decrease with increased distance from A. sericeasur nests.This study was conducted in the Soconusco region of Chiapas, Mexico at Finca Irlanda, a shaded, 300-hectare commercial polyculture coffee plantation. The plantation is located in the Sierra Madre de Chiapas Mountains at an elevation of 1100 m.a.s.l. The average canopy cover throughout the farm is 75 percent and the majority of the plantation shade trees are of the genus Inga. The climate is semi-tropical, square pot with the rainy season occurring between May and October. Vegetation management at Finca Irlanda frequently includes “chaporreo”, in which farm workers periodically use machetes to clear the weeds and epiphytes that grow between coffee plants. This management practice facilitates farm worker movement between coffee plants and reduces competition between weeds and coffee plants, but in the process inadvertently eliminates vegetation connections between the coffee plants and A. sericeasur nest trees.

We collected data between June and August in the summer of 2022. Within the 300 hectares of Finca Irlanda, we selected 17 trees with active A. sericeasur nests as study sites. Each site was located at least 10 m away from any other active A. sericeasur nests to prevent overlapping ant activity, following the methodology used by Jimenez-Soto et al..We chose six coffee plants within a 5 m radius of each A. sericeasur nesting tree for a total of 102 coffee study plants. At each nesting tree site, we selected two coffee plants for the natural vegetation connectivity treatment, two for the artificial connectivity treatment, and two as isolated control plants . For the vegetation connectivity treatment, we selected two coffee plants with existing vegetation connections. The vegetation connections were either coffee branches directly touching the A. sericeasur nest tree or coffee branches touching a secondary plant, such as a vine or epiphyte that was touching the nest tree. We selected two coffee plants for the artificial connectivity treatment, in which we tied jute strings between the point of the nest tree trunk with the most active ant foraging trail and the central trunk of each coffee plant. We ensured that there were no existing vegetation connections on these plants and that the string was the only point of connection between each coffee plant and the nest tree. For the control treatment, we selected two isolated coffee plants with no connections between the coffee plants and the nest tree. We measured the distance between the central trunk of each study coffee plant and the ant nest tree.At each site, we quantified the ant activity on the coffee plants by counting the number of A. sericeasur that passed a central point on the central trunk of each coffee plant during 1 min . The observations took place between 7:30 AM and 2 PM before the afternoon rainy period. The observations were stopped if it began to rain, as rain significantly reduces ant activity. After setting up the strings, we returned to each site between 7 and 13 days after the initial setup and re-measured ant activity on the coffee plants.To assess the impact of artificial and vegetation connectivity on prey removal by A. sericeasur, we placed five dead adult female CBB on white index cards on the centraltrunk of each coffee plant . We monitored A. sericeasur interactions on the cards for one hour, ensuring that only A. sericeasur were responsible for removing CBB, and counted the number of CBB removed. Because it has already been well-documented that A. sericeasur remove live CBB from coffee plants, we used dead prey to avoid the possibility of live CBB escaping during a longer observation period. The CBB were collected from infested coffee berries in the field, then frozen for up to 5 days before use.Recruitment is understood to be an integral component of trail-following in which ant workers follow chemical foraging trails to a food source, then re-apply chemical trails until that food source is exhausted. Tuna baiting is an effective and widely used method of assessing ant recruitment in coffee agroecosystems. To assess the impact of connectivity on ant resource recruitment efficiency, we placed 1 g of canned tuna on the central trunk of each coffee plant 1 m above ground and recorded the number of A. sericeasur that recruited to each tuna bait after 20 min.To test for statistical differences in ant activity, resource recruitment efficiency, and CBB removal between the control, string, and vegetation treatment coffee plants over the 5-week experiment, we fit our data with generalized linear mixed models using the lme4 package in R. For each response variable , we included the time , the treatment method , the distance between the coffee plant and the ant nest tree , the interaction between the treatment and the time, and the interaction between the time and the distance as fixed effects. As random effects, we modeled the coffee plant identity nested within the site to control for site variation and spatial non-independence. To assess count data , we originally fit each model to a Poisson distribution. However, to correct for observed over-dispersion, we instead modified each model to a negative binomial distribution.We observed A. sericeasur using the artificial string connections at 12 of the 17 sites and on 20 of the 33 strings placed . A. sericeasur were the only ants observed using the strings. Out of 33 vegetation treatment plants , 20 plants included primary connections , and 13 plants were connected by secondary connections . Ant activity was higher on the vegetation treatment coffee plants than on both the control treatment and the string treatment . There was no difference in ant activity between the string and control treatments . There was a significant effect of time on ant activity for the string treatment, indicating an increase in ant activity on the string plants after connecting the strings . There was no effect of time on ant activity for either the control or vegetation treatments, indicating that there was no significant change in ant activity for those treatments over the 5-week experiment .Treatment, time, and distance all impacted the ant recruitment to tuna baits. More ants recruited to the tuna baits on the vegetation treatment plants than on the strings, and more ants recruited to the bait on string plants as compared to the control plants . The overall number of ants that recruited to the baits decreased with time poststring placement on both the control and vegetation plants, but there was no significant change in the number of ants recruiting to the baits on the string treatment . The number of ants recruiting to the baits on the control and string plants declined with distance from the nest tree, but was consistent over all distances for vegetation treatment plants .

Phenolics were extracted from fresh and dried flowers that were either whole or homogenized

Cyanidin-3,5-diglucoside was the next most concentrated anthocyanin, averaging 20.11 ± 5.63 mg per 100 g FW in 2018 and 19.80 ± 6.92 mg per 100 g FW in 2019. This is unlike European elderberries, in which cyanidin-3-glucoside is typically the second most prominent anthocyanin, except for the Ljubostinja cultivar which has more cyanidin-3,5-diglucoside than cyanidin-glucoside42. Cyanidin-3-sambubioside-5-glucoside and cyanidin-3-glucoside were also quantified in the berries. Cyanidin-3,5-diglucoside and cyanidin-3-sambubioside-5-glucoside were not detected in blue elderberries grown in Slovenia,suggesting the growing location impacts the profile of phenolic compounds or perhaps the two samples going by the same name are not, in fact, related 109. There were no acylated anthocyanins identified in the blue elderberry, like those abundant in the American elderberry. Overall, total anthocyanin concentrations averaged 61.54 ± 16.70 mg per 100 g FW in 2018 and 58.58 ± 22.18 mg per 100 g FW in 2019. The total concentration of anthocyanins in the berries was much lower compared to the other subspecies. Analysis of European elderberries that measured cyanidin-based anthocyanins found an average of 863.8 ± 49.9 mg per 100 g FW 8 .

European elderberries grown in different locations at different altitudes had a range of 289.74 ± 66.18 to 792.66 ± 27.97 mg per 100 g FW 6 . In studies on American elderberries, one had an average of 265 ± 74 mg per 100 g FW 49, another had average of 248 ± 83 mg per 100 g FW 18, and a third had an average of 242.7 ± 91.0 mg per 100 g FW 50 . The flavan-3-ols catechin and epicatechin were measured in the elderberry, nft vertical farming with epicatechin typically present in higher concentrations. The concentrations found in the present study are similar to those found in others, even across subspecies. Blue elderberry grown in Slovenia had 4.40 ± 0.26 mg per 100 g FW of catechin and 8.49 ± 0.37 mg per 100 g FW of epicatechin. The same study found no catechin present in S. nigra ssp. nigra, but 6.37 ± 0.28 mg per 100 g FW of epicatechin. In a study of European berries growing in different locations at different altitudes, total flavanol concentrations ranged from 1.93 ± 0.22 to 9.67 ± 0.66 mg per 100 g FW 6 . The variability in phenolic and anthocyanin content observed in this study is not surprising, as multiple other studies have shown significant variability in other commercialized elderberry subspecies, even with clonally propagated cultivars. For example, Lee and Finn 49 saw an average of 45% higher anthocyanins in their second harvest of American elderberries grown inOregon as compared to their first harvest, though the total phenolics only increased an average of 20%. Johnson et al. 54 observed significant changes between subsequent years in anthocyanin and phenolic compound concentrations in juices prepared from American elderberry grown in two locations in Missouri.For example, in the Adams II sample grown in one Missouri location, the quercetin 3-rutinoside content was 298 ± 48 mg L-1 in 2012, 792 ± 143 mg L-1 in 2013, and 47 ± 13 mg L-1 in 2014 54.

In a study of 107 wild American elderberries samples grown in five regions of the eastern United States by Mudge et al. 110 high variability was found in selected flavonoid compounds with an average RSD of 55.3% across samples. Overall, there is a body of evidence demonstrating that elderberry composition can vary year to year or by growing conditions even in clonally-propagated cultivars; therefore, it may be necessary to use standardization techniques for bioactive compounds in order to maintain consistent quality in elderberry products. Blue elderberry grown in California hedgerows has similar levels of sugar, organic acids, and TPC to the European and American elderberry subspecies. Furthermore, the phenolic profile of blue elderberry is similar to European elderberry, in that chlorogenic acid, rutin, and cyanidin-3-sambubioside are the predominant hydroxycinnamic acid, flavonol, and anthocyanin, respectively. However, anthocyanin levels are significantly lower in the blue elderberry compared to European and American subspecies, yet the levels of total flavonols appears to be much higher than the other subspecies. 5-Hydroxypyrogallol hexoside and protocatechuic acid dihexoside were identified for the first time in elderberry, which could potentially serve as markers of this subspecies in products that use blue elderberry. There was considerable variation within and between hedgerows in both harvest years, but this appears to be a common attribute for the elderberry species. Blueelderberries have many ecological benefits for farms when planted in hedgerows, grow well in challenging environments, are not killed by wildfires and can therefore, serve as a sustainable source of an increasingly popular fruit.The elderberry is a deciduous, multi-stemmed shrub or small tree. 

It can grow several meters high and in diameter and produces hundreds of clusters of aromatic flowers in the spring, that mature into small berries in summer. The plant grows well in a variety of soils and climates, and is a native of Northern America, Europe, and parts of Asia. While there are many subspecies within Sambucus nigra, the primary subspecies widely grown and commercially cultivated include S. nigra ssp. nigra found across Europe, and the “American” subspecies S. nigra ssp. canadensis, which is native to the eastern regions of North America.56 The blue elderberry , is a drought-tolerant subspecies native to the western region of North America. The blue elderberry grows in riparian ecosystems from southern British Columbia, Canada to northwest Mexico. In California, there have been efforts for more than a decade to increase the levels of blue elderberry planted in hedgerows on farms because of its environmental benefits, such as improving the air, water, and soil quality, as well as providing food and shelter for pollinators. It is now recognized that these mature hedgerow plants can be a source of locally grown elderberries and elderflowers to increase income and sustainability for the farm. However, to date there is no data on the concentration of the aroma or phenolic compounds in the flowers from this hardy heat-tolerant subspecies. The berries, flowers and bark of the elderberry plant have a long history of use by humans as both food and traditional medicine. Seeds have been found in archeological sites that date to the late stone age and their medicinal use is documented in the writings of Theophrastus , Pedanius Dioscorides and Gaius Plinius Secundus . Elderflowers are frequently used in medicinal and herbal teas, tonics, liqueurs, lemonades, and sparkling waters for their subtle and unique floral, fruity, and green aromas and medicinal properties. Infusions of elderflowers have been used in many cultures for the treatment of inflammation, colds, fever, and respiratory illness and for their diuretic and antidiabetic effects. Some studies have found evidence to support their use, such as antimicrobial activity of elderflower extract against Gram-positive bacteria and high vitro antioxidant activity. Much of the interest for using elderflower in health-promoting applications is based on the high content of biologically active phenolic compounds in the flowers. European and American elderflowers contain an array of phenolic compounds, such as phenolic acids , flavonols , flavonol glycosides [isorhamnetin-3-O-rutinoside , rutin ], flavan-3-ols [-catechin, -epicatechin], and flavanones. In European-grown elderflowers, the dominant phenolic acid and flavonol glycoside include chlorogenic acid and rutin, although isoquercetin, vertical tower for strawberries isorhamnetin-3-rutinoside and kaempferol-3-rutinoside are also present. For example, in a study of European elderflowers grown in different locations and altitudes, the dominant class of phenolic compounds were the flavonols, namely rutin , whereas chlorogenic acid levels were lower . This study also found that the flowers contain four times more chlorogenic acid than the leaves or berries. The predominant phenolic compounds identified in elderflower syrup, a traditional herbal beverage, include chlorogenic acid and rutin . There has been only one study on the phenolic profile of the flowers of S. nigra ssp. canadensis which appears to be similar to the European subspecies, in that rutin and chlorogenic acid are the primary flavonol and phenolic acid identified, respectively. 

The aroma of the elderflower is derived from the volatile organic compounds in the flower and is an important characteristic to understand for consumer acceptance in applications.To date, only the VOCs of elderflowers from the European subspecies have been studied. The American subspecies S. nigra ssp. canadensis has not yet been investigated. As fresh flowers are highly perishable, many commercial products rely on dry, and in some cases, frozen flowers. Thus, it is important to understand how the organoleptic properties of elderflowers change in response to processing. The VOC profile of tea made with elderflowers of three European cultivars using dynamic headspace sampling revealed compounds important to the characteristic aroma to be linalool, hotrienol, and cis– and trans-rose oxide. Similarly, studies indicate that in fresh and dried flowers analyzed by headspace solid phase microextraction coupled with gas chromatography mass spectrometry , linalool oxides are the main aroma compounds. Linalool oxide has a floral, herbal, earthy, green odor. In hexane extracts of dry elderflowers analyzed via HS-SPME/GC-MS, cis-linalool oxide and 2-hexanone were the primary volatiles. The compound 2-hexanone has a fruity, fungal, meaty, and buttery odor.80 In syrups made from elderflowers, terpene alcohols and oxides were identified as the primary aroma compounds. Studies of the impact of drying on volatiles in the flowers demonstrate that nearly all types of drying change the volatile profile significantly. The aim of this study was to characterize the composition of phenolic compounds and VOCs in flowers of the blue elderberry , and to determine how these compounds change in response to drying and in the preparation of teas. Understanding how the aroma and phenolic compounds compare with current commercially available European and American subspecies will help to establish a role for blue elderflowers in commercial applications such as herbal teas and as a flavoring for beverages, as well as identify unique compositional qualities of this native and underutilized flower.An aqueous mixture of ethanol was used to extract the phenolic compounds from flowers. The optimal mixture of ethanol to water was determined by extracting flowers in 0, 25, 50, 75, and 100% ethanol. Solvents also contained 0.1% HCl and 0.1% ascorbic acid . For each extraction, 0.25 g dry flower material and 25 mL solvent were added to 50 mL Eppendorf tubes. The dry flowers with solvent were homogenized for 1 min at 7000 rpm with a 19 mm diameter probe head in the 50 mL tubes. Homogenized extracts were refrigerated overnight at 4 °C, then centrifuged at 4000 rpm for 7 min . The supernatant was filtered through 0.45 µm PTFE, then diluted 50% with 1.5% phosphoric acid before analysis. Three replicates were made for each extraction condition . Hence, four types of samples were made: fresh whole flowers , dry whole flowers , fresh homogenized flowers , and dry homogenized flowers . Flowers were mixed with the determined optimal extraction solvent and followed the same extraction process as described above, except whole flower samples were not homogenized and instead placed directly into the refrigerator to extract overnight.All sample extracts were analyzed via high performance liquid chromatography using an Agilent 1200 system with diode array detection and fluorescence detection . Separation of phenolic compounds was performed on an Agilent PLRP-S column at 35 °C, using a previously published method. Mobile phase A was 1.5% phosphoric acid in water and mobile phase B was 80% acetonitrile, 20% mobile phase A . The flow was set at 1.00 mL min-1 . The gradient used was as follows: 0 min, 6% B, 73 min, 31% B, 78-86 min, 62% B, 90-105 min 6% B. Most phenolic compounds were detected using a at 280 nm , 320 nm , and 360 nm . Flavan-3-ols were detected using a fluorescence detector . Compounds were quantified using external standard curves employing surrogate standards for each group of phenolic compounds [-catechin for flavan-3- ols, chlorogenic acid for phenolic acids and simple phenols, quercetin for flavonol aglycones, and IR for flavonols]. Standards were prepared at concentrations of 200, 100, 50, 10, and 5 mg L -1 , except IR which included an additional concentration of 500 mg L -1 . Triplicate analyses of each concentration were performed .Compounds were separated using HPLC-DAD-FLD as described above and identified using authentic standards to check retention time and absorption spectra. Several peaks in the chromatograms did not match tR or spectra of authentic standards. Therefore, fractions of these peaks were collected. Fractions were dried and reconstituted in 1% formic acid in water.

The food-grade gum  possesses tactile and odorant cues resulting in reduced egg infestation

These results agreed with previous studies on the relationships between grapevine water status and yield components . However, leaf area and crown porosity were not affected by applied water amount treatments in 2020. This might havebeen resulted from the remarkably high air temperature at the experimental site, diminishing the grapevine vegetative growth despite the water compensation from irrigation . Consequently, berry quality parameters were slightly affected by irrigation treatments, with only TSS being higher with greater water stress in the harvest of the first season due to berry dehydration and potential promotion in sugar accumulation .There were two flavonoid classes monitored in this study, anthocyanins and flavonols. They are highly sensitive towards environmental conditions . This study evidenced that SH increased berry skin anthocyanin and flavonol concentrations compared to the other trellis systems over the two seasons. SH might have had more advancement in berry development due to more efficient leaf area to fruit ratio achieved in this trellis system . Furthermore, low round pots the crown porosity of SH was ranging from 0.20 to 0.30, a window of inferred solar radiation exposure identified in previous works for `Cabernet Sauvignon´.

As for VSPs, anthocyanin degradation was unlikely to be the reason why VSPs had lower anthocyanin concentration since the greater leaf area could have provided berries some degree of protection from receiving excessive solar radiation . This can be confirmed by the fact that TSS and berry skin anthocyanin concentration were still synchronized in 2020. However, there was a decoupling of TSS and berry skin anthocyanin concentration in 2021, where the VSPs had higher TSS but lower skin anthocyanin content. Unlike the first season, the leaf area and canopy crown porosity showed no difference among the trellises, but the effective leaf area that can provide protection against excessive solar radiation might differ between SH and HQ from the other trellis systems. Hence, even with similar leaf areas, the VSPs still exposed clusters to the environmental stresses, which promoted TSS accumulation due to dehydration but greater anthocyanin degradation, similar to what was observed in previous studies . Although the TSS levels in this study were not at the level for reaching the tipping point of anthocyanin degradation as previously reported , compared to the SH and HQ with greater height from the vineyard floor, the VSPs might have been more easily affected by the solar radiation and heat reflected from soil surface, causing hotter and drier canopy microclimate and inevitably lead to greater anthocyanin degradation .

Additionally, some previous studies have shown negative relationships between yield and berry composition . Similar observations in this study might be due to source organs of the VSPs were not distributed widely enough to be as efficient as those of the SH and HQ, resulting in lower photosynthetic capacity in their canopies, which further reduced the translocation of photosynthates flowing into berries to promote TSS accumulation and flavonoid biosynthesis. As for flavonols, previous studies have shown that flavonols are very sensitive to solar radiation, especially UV radiation, where more light will often increase flavonol concentration in berry skins . The results from this work corroborated previous observations that less leaf area with more crown porosity would increase solar radiation inside the canopy, and further increase flavonol concentrations in berry skins . Additionally, SH and HQ showed greater concentrations in di-hydroxylated flavonols as well as some tri-hydroxylated flavonol derivatives. Water deficits, achieved by manipulating applied water amounts through irrigation, can significantly improve flavonoid concentrations in grape berries . Similar results were observed in our findings as well, where 25% ETc was able to increase anthocyanin and flavonol concentrations in grape berries. One previous study at the same experimental site showed that 25% ETc could potentially increase the possibility for flavonoid degradation and decrease the wine antioxidant capacity .

However, we did not see such effects in this study. This might be because berry sugar accumulation was not affected among the three applied water amounts, and the overall TSS levels did not exceed the tipping point . It was repeatedly been noticed that, beyond this TSS level, skin anthocyanins and even flavonols would start to significantly degrade in a hot climate . Hence, in our study, all the treatments might have ended up having similar advancements in berry flavonoid accumulation because of the similar levels of TSS without any promoted accumulation or degradation among the three irrigation strategies , but 25% ETc was able to decrease berry weights, which resulted in higher concentrations in anthocyanins and flavonols.Positive relationships between flavonols and solar radiation, especially UV-B, have been consistently observed in previous research, clearly indicating that more solar radiation penetrating into the canopy interior promotes flavonol concentration in berry skins . Further, flavonol content and derivative proportions exhibited strong relationships with solar radiation , which was confirmed in this study, where quercetin proportion and both total flavonol concentration correlated strongly with leaf area and crown porosity especially with VSP types. When the high air temperature or drought conditions became extreme, flavonoids in berry skins started to degrade . For all six trellis systems in 2020, the relationships between flavonols and canopy architecture were strong. These relationships between leaf area/crown porosity and flavonols can provide a feasible way of assessing canopy architecture in terms of the canopy’s contribution towards berry composition and vice versa. This approach is not limited only to red cultivars and can also be applied to white cultivars since flavonols are still synthesized in their skin tissues . Also, for quercetin specifically, it is the most abundant flavonol derivative in grape berry skins. Hence, the compound would be unchallenging to isolate and extract, offering an easy assessment of the effects of solar radiation on berry flavonol profiles. Interestingly, in this study, the VSPs did not result in higher quercetin or total flavonol concentrations, indicating that these trellis systems might not be suitable for accumulating or maintaining flavonoids in berry skins in a hot climate regardless of TSS levels compared to other trellis systems. Although the relationships between canopy architecture and flavonols were strong in this study and align with previous reports, the influence of canopy structure imposed by trellis system on berry chemical development needs more investigation to understand the contributions of trellis systems to canopy architecture and canopy microclimate.Commerce via global trade and transport provides a mechanism for introduction of invasive species to new territories, extending pest habitats outside of their native regions . Invasive species threaten biodiversity, habitat, nutritious food, clean water, resilient environments, sustainable economies, and human health . Agricultural production systems are continuously challenged by invasive species that attack high-value crops, plastic pots 30 liters thereby significantly hampering the ability of food industries to maintain profitability . The geographic range of agricultural crops provides the potential for invasive species to colonize regions on a global scale . Factors that aid expansion include short life cycle, fast growth rate, high plasticity, and resiliency to a wide range of environmental conditions . Such factors are drivers of rapid evolutionary change, population increase, and global colonization . Practitioners and stakeholders should aim to implement new strategies to manage such new invasive species in agricultural production . Drosophila suzukii Matsumura is an invasive species native to Southeast Asia. Passive transportation is the main reason of the dispersal of this species .

It was first detected in North America and Europe in 2008 , and later in South America in 2013 , and Northern Africa in 2017 . The long-serrated ovipositor of D. suzukii enables it to oviposit inside fresh fruit, which creates a challenging management problem . Emerged larvae burrow within fruit pulp rendering fruit unmarketable . When D. suzukii became established in the U.S. during 2008, the total annual revenue losses for the West Coast berry and cherry industries were estimated at over $500 million . Currently the situation is not changed in term of economic impact . This particular insect is challenging to manage due to its high dispersal potential, ability to survive and adapt to harsh environmental conditions, and ability to attack a wide host range. For these reasons, D. suzukii is a key pest of these fruit industries worldwide. In the last decade, conventional insecticide uses on affected crops significantly increased to manage D. suzukii fruit damage. Typically used insecticides include spinosyns, pyrethroids, and organophosphates . Intensive use of insecticides poses a tremendous risk to non-target organisms such as pollinators, natural enemies, and humans . In addition, frequent insecticide applications likely resulted in resistance development . These factors require development of an IPM program that includes alternatives to conventional insecticides for managing D. suzukii. Non-insecticidal control methods including cladding, irrigation, netting, mulching, pruning, monitoring and mass trapping have been implemented against D. suzukii . While each method provides some relief to D. suzukii pressure, they provide limited reductions in crop damage . Behavioral control of D. suzukii on susceptible fruit indicated promise for industry adoption. The food grade gum makes use of physical properties to mimic fruit, resulting in D. suzukii laying their eggs in a soft gel-like substrate, instead of the fruit itself. The food grade gum is a mixture of food-grade ingredients which is highly attractive to D. suzukii and competes with the ripening fruit throughout the season . To the best of our knowledge, the food-grade gum modifies various D. suzukii behaviors, ultimately resulting in a significant decrease in fruit damage. The product diverts D. suzukii away from ripening fruit, which results in significant retention of the pest, keeping it away from fruit. Third, the food-grade gum acts as an egg sink. Since the D. suzukii eggs laid in this medium cannot develop, this translates in a substantial reduction of the pest population growth . The aim of this work was to determine the potential of the food grade gum to reduce D. suzukii damage in large-scale commercial open-field and screen house fruit production units on blueberry, cherry, raspberry, blackberry, and wine grape. The hypothesis was that food-grade gum would reduce D. suzukii damage in small fruit, tree fruit and grapes under semi-field and small-scale field conditions. These studies were conducted during 2019 and 2020 in California and Oregon in the western United States.In all field trials, GUM dispensers were placed at least 27 meters away from untreated control plots to minimize volatile plume interaction between treatments. In the current study, cotton pads were used to apply ~1.8 g of GUM on each dispenser at the rate of 124 dispensers per hectare under commercial production conditions . Cotton pads were placed directly on the ground close to irrigation drippers to provide adequate daily moisture. Earlier work illustrated that dispensers have a field longevity of 21 days and for this reason, dispensers were therefore deployed 1 to 4 times depending on the duration of crop ripening and susceptibility. In three trials , egg laying data were collected in buffer plots that were located between UTC and GUM plots to determine the active range of released volatiles beyond treated areas. This design was implemented based on the assumption that volatiles from treatment plots may be blown or diffuse beyond treatment plots. Berries were brought to the laboratory to determine number of eggs in fruit for each of the plots using a dissecting microscope. All soft or damaged fruits were excluded when assessing presence of eggs. In some cases, at first fruit color, laboratory-reared D. suzukii flies were released in each plot with the intent to create a relatively even pest pressure in all plots. Colonies of D. suzukii used in field studies consisted of seasonally collected wild adults from multiple field sites in the Willamette Valley, Oregon, and Oxnard, California. Collected adults were released into plastic cages and reared at 24°Cand 70% relative humidity, with a 16:8 h photo period before being released in the respective field trials. Flies were constantly provided with water and artificial diet that served as both a food source and an oviposition medium. Before their use in experiments, all flies were allowed to mate for 8 d in mixed-sex cages. Some small fruit varieties were numbered since this information is proprietary.A replicated field trial on drip-irrigated Pinot noir winegrape was conducted in Yamhill County, Oregon, USA from 10 to 18 October 2019 on ~2.6 hectares. Vines were spaced at 1.5 by 5 m, and trellised on a standard four wire trellis system, supporting a ~2 m canopy.

Rather than hiring workers directly, many farmers are turning to crop support service firms

Although the TCM use of goji berry also includes the leaves and bark of the plant, this review will discuss the potential benefits of the fruit on eye health. In addition to a robust amount of Z, goji berries contain modest amounts of β-cryptoxanthin, β- carotene, neoxanthin and L. The Z and L content among different varieties of dried goji berries cultivated in Ningxia province ranged from 25 to 152 mg/100g, and 0.3 to 1.9 mg/100g, respectively. According to the United States Department of Agriculture food database, one serving of goji berries is 28 g, which would provide up to 42.6 mg of L + Z, depending on the cultivar. Moreover, the predominant form of Z in goji berries is a dipalmitate, found with a diester linkage. The ratio of Z dipalmitate to total carotenoids was up to 55% and 88%, in fresh and dried goji berry fruit, respectively. This esterified form of Z showed a significantly higher intestinal absorption than monoester and free Z due to the high efficacy of hydrolysis, blueberry grow pot mainly by carboxyl ester lipase. Plasma Z was significantly increased in individuals consuming 15g goji berries daily for 28 days in comparison to those on a habitual diet. 

Participants consuming 5 mg of Z dipalmitate extracted from goji berries showed a higher plasma Z concentration than when they consumed the same amount as unesterified Z over a nine to 24 hour period. The high Z content of goji berries has been proposed as a dietary source to reduce the risk of AMD, although studies are limited.150 In one study, circulating Z levels were significantly higher in healthy older individuals who consumed 10 mg of Z extract from goji berries daily for 90 days. No change in macular pigmentation or soft drusen was observed, but MPOD was not measured. In an uncontrolled trial, individuals with early stage AMD who consume a beverage containing 12 mg of L and 2 mg of Z derived from marigold flower and goji berry, respectively, daily for five months, showed higher circulating levels of L and Z, lower intraocular pressures, and better best-corrected visual acuity scores. Unfortunately, the study lacked a control group, did not test the effect of Z separately, and did not clarify whether the form of Z extracted from goji berry was the dipalmitate. Another study investigating the effects of an herbal formula among healthy adults with dry eyes noted that those chewing tablets containing L , Z , extracts from blackcurrant, chrysanthemum, and goji berry showed dose-dependent reductions in eye fatigue symptoms, improved tear secretion as well as MPOD, compared to placebo. 

The basis of this formula was derived from TCM, so the multi-component formulation could not directly inform the role of any single ingredient. A study in patients with early AMD reported that the MPOD was significantly higher in those consuming 25 g/day of goji berries for 90 days, compared to their baseline levels and to a habitual diet control group. The BCVA was also significantly improved in the goji berry group compared to their baseline values. We recently reported that MPOD and skin carotenoid scores were increased in healthy middle-aged individuals consuming 28 g/day of goji berries five times a day for 90 days compared to a group taking a supplement with 6 mg of L and 4 mg of Z. These results illustrate that MPOD levels can increase in healthy individuals even without early signs of AMD. While these results are encouraging, longer intervention periods with a larger number of participants are necessary. In addition to AMD, goji berries have been studied as a therapy for retinitis pigmentosa, an inherited retinal disease. Patients who consume 0.35 g/d of LBP for 12 months showed a significant improvement in visual acuity and macular thickness, compared to control subjects who did not consume L or Z. Examples of human studies that evaluated the effects of supplements containing goji berries on retinal health are shown in Table 1. Based on preclinical evidence, potential benefits of goji berry intake on glaucoma and diabetic retinopathy may also exist. Goji berry extract ameliorated the high glucose-induced blood-retinal barrier disruption in human retinal pigment epithelial cells.

Studies reported that LBP showed significant neuroprotective effects over retinal ganglion cells in male C57BL/6N mice and Sprague-Dawley rats with ocular hypertension. In db/db mice, goji berry extract restored the thickness of the retina, the ganglion cell number, and the integrity of RPE after daily intake over eight weeks. Although research on the upper limit of goji berry intake is scarce, goji berry allergy risk has been associated with the existence of cross-reactivity to nonspecific lipid transfer proteins from peaches, tomatoes, tobacco, tree nuts, and select pollens. In addition, bleeding symptoms after consuming goji berry juice, tea, or wine have been described in case reports among patients taking warfarin, an anticoagulant medicine. Although the potential value of foods high in L and Z during pregnancy and lactation has been discussed above, the utilization of goji berry products during these unique periods in a woman’s life needs special caution. Clinical studies of goji berries on eye health have been conducted primarily in Asia, with emerging research reported from Italy, Lithuania, and Switzerland. Potential gene-nutrient interactions must be considered when comparing results from Asian with Caucasian populations. Over the past decade, the number of H-2A guest workers employed on California farms increased more than tenfold, so that almost 44,000 farm jobs were certified to be filled by H-2A workers in fiscal year 2022 . During FY2020, two-thirds of the H-2A jobs certified in California were in crop support services. Most crop support jobs were with farm labor contractors , but one sixth were hired directly by fruit producers. Almost 10% of the H-2A workers were hired directly by vegetable producers . Until the 2008–2009 recession, most H-2A workers were in southeastern states such as Florida. However, the slowdown in migration of undocumented individuals after 2008–2009, hydroponic bucket combined with a stable demand for farm workers and the aging and settling of undocumented workers who arrived before 2008–2009, contributed to the rapid growth in the H-2A program in the three Pacific Coast states that employ half of U.S. farm workers, a third of whom work in California.This paper analyzes agricultural employment data from the California Employment Development Department and the Quarterly Census of Employment and Wages to understand changing patterns of farm worker employment in the 21st century. The data show that seasonality is declining in most regions and commodities, primarily because of higher employment during the winter months, which may reflect more winter pruning jobs and fewer summer harvesting jobs. Second, the data emphasize the increasing importance of non-farm crop support employers, mostly labor contractors, who bring workers to farms to perform specific tasks. More farms appear to be developing a year-round workforce that is hired directly and supplemented when needed with workers brought to farms by labor contractors, including H-2A guest workers . California requires all employers who pay $100 or more in wages to enroll in the state’s unemployment insurance system and pay taxes of 1.5% to 6.2% on the first $7,000 of each employee’s wages to cover the cost of unemployment benefits for laid-off workers . Employers also report their employment for the payroll period that includes the 12th of the month. Summing these monthly employment totals and dividing by 12 months generates average employment, also referred to as year-round equivalent jobs.

The monthly employment measures allow us to determine the peak and trough employment months. Agricultural employment, as defined by the North American Industry Classification System , peaked at 470,000 in May 2020 and was 346,000 in March 2020, generating a peak-trough ratio of 1.4. More than 470,000 workers are employed on California farms sometime during the year. Workers who are employed only in payroll periods that do not include the 12th of the month, such as those who work only during the first, third, or fourth weeks of the month, are excluded from average employment. In 2016, when California’s agricultural employment averaged 425,000, almost a million unique Social Security Numbers were reported by the state’s agricultural employers, suggesting 2.3 unique workers for each year-round equivalent job . California became the leading farm state in terms of sales in 1949, when Los Angeles County led the United States in farm sales . The state’s population doubled between 1950 and 1970, from 10 million to 20 million, and agricultural sales grew fastest in the San Joaquin Valley after water projects allowed more acres to be irrigated and suburbanization reduced the availability of farmland in coastal areas. Citrus and dairy farms in Southern California migrated north to SJV, while tree fruit farms moved from the urbanizing Bay Area to the San Joaquin and Sacramento valleys . Three SJV counties — Fresno, Kern and Tulare — accounted for 20% of California farm sales in 1949, a third in 2000, and almost half of the state’s farm sales in 2020 . Some crops that were already concentrated in the Sacramento and San Joaquin valleys expanded in acreage. For example, there were 90,000 bearing acres of almonds in 1950, almost 150,000 acres in 1970, 500,000 acres by 2000, and 1.3 million acres in 2022. Most of this additional almond acreage was in the San Joaquin Valley. New orchards and dairies in the San Joaquin and Sacramento valleys were often larger and more efficient than the coastal farms they replaced, and their higher productivity was reflected in rising yields. Average yields of many fruits and vegetables doubled and tripled over the past three decades; bell peppers and cantaloupes are examples. Yield rose over 50% to 33 tons an acre for strawberries . The major change in California crop farming over the past half-century has been the rising share of high value fruits, nuts, vegetables, and melons, as well as horticultural specialties such as flowers and plants, in the state’s farm sales. In 1960, the value of fruit, vegetable, and horticultural commodities was two-thirds of the total value of California crops; since 2000, FVH commodities have accounted for over 90% of the value of California crops, reflecting growing consumer demand for fresh produce and nursery plants . Cotton was California’s most valuable crop in 1950; by 2000, cotton was the sixth most valuable crop, and by 2020 cotton was no longer among the state’s top 20 crops. The demand for FVH commodities rises with income, and rising farmland prices encouraged individuals and investors to buy farmland as a hedge against inflation in the 1970s, a decade in which the value of California farmland more than doubled . Higher interest rates in the 1980s led to a farm financial crisis that was more severe in midwestern states than in California, but encouraged some oil firms and conglomerates to sell their California farmland. The data in table 1 show that California’s farm sales almost tripled in three decades, and that fruit and nut sales almost quintupled. The value of the state’s vegetables and melons doubled, as did the value of greenhouse and nursery crops. The state’s farm sales were $17.8 billion in 1990, including $4.4 billion worth of fruits and nuts and $3.9 billion worth of vegetables. Farm sales were $27.2 billion in 2000, including $7.3 billion worth of fruits and nuts, $6.2 billion worth of vegetables, and $2.8 billion worth of greenhouse and nursery commodities. This rose to $37.5 billion in 2010, including $13.5 billion worth of fruits and nuts, $6.7 billion worth of vegetables, and $3.8 billion worth of greenhouse and nursery commodities. In 2020, farm sales were $49.1 billion, including $20.6 billion worth of fruits and nuts, $7.8 billion worth of vegetables, and $6.3 billion worth of greenhouse and nursery commodities. In real or inflation-adjusted terms, California farm sales rose by 40% over 30 years, and fruit and nut sales by 140%, while vegetable and nursery sales were little changed.Many FVH commodities are labor intensive, so expanding production increases the employment of farm workers. These are non-farm businesses that bring workers to farms to accomplish specific tasks. For example, farmers may rely on labor contractors to bring crews of workers for a few weeks to prune, thin, or harvest their crops. Contractors may be the sole employers of the workers they bring to farms under some labor laws, such as unemployment insurance and workers’ compensation, and joint employers with farms under others, such as the Agricultural Labor Relations Act.

A typical application for analog signals is battery voltage monitoring

Once a complete set of sensors were developed and tested, we implemented a basic remote control application to verify the functionality of the Max32 as well as the AGV platform. Details on the AGV are presented in Chapter 7. We designed the OSAVC with a few goals in mind. The most important of which being that the controller be vehicle agnostic—that is, adaptable to a large class of vehicle types. This translates into the hardware supporting as wide a variety of interface and output protocols as practical. Fig. 3.2 shows a more detailed view of the controller. The firmware architecture was designed to be as simple and as temporally deterministic as possible. To this end the dynamic control algorithm and the state estimation algorithms are modular. This allows these algorithms to be designed and tested in control-specific software and ported out as C functions which can then be compiled with the vehicle firmware directly2 . We demonstrate this approach in Chapter 5. We also required the sensor drivers to be non-blocking and the control loop to operate using a hardware timer to minimize timing jitter. The last goal is to enable as large a community as possible. To support this goal the hardware design and firmware are open source and hosted online.

The sensors we selected are ones typically used in resource-constrained autonomous vehicles. Possibly the most common one is the inertial measurement unit, or IMU. This sensor consists of three triaxial sensors in a single package: gyroscopes to measure angular rotation rates, nft hydroponic system accelerometers to measure specific force, and magnetometers to measure the earth’s magnetic field strength. The gyroscopes are used to compute the dynamics of the vehicle, the accelerometers and magnetometers are used to determine the vehicles attitude relative to known inertial vectors—gravity and the magnetic field. Almost as ubiquitous as the IMU is the GPS receiver. This sensor calculates the vehicle’s location in global coordinates by measuring the range of the sensor to four or more satellites at known orbital locations and computing the optimal fit of those ranges. GPS sensors can also provide other useful data, such as the current time, vehicle heading and speed in inertial coordinates. Another commonly used sensor is an angular encoder. This device measures the angle of rotation around an axis. In the AGV it is used to calculate the speed of the motors as well as the angle of the steering servo. In other areas of robotics they measure joint or actuator angles. The microcontroller itself has built in analog to digital converters . Some sensors communicate their output using analog signals.

The last sensor we selected is a LiDAR sensor . LiDAR is commonly used to detect local obstacles in the environment. It operates by measuring the time of flight of a laser beam on a round trip path from the vehicle to an obstacle. In addition to the sensors decribed above, there are several peripherals commonly needed for autonomous vehicles. Electronic speed controllers are used to provide control signals to brushless DC motors . ESCs require a specific form of PWM signals to command the motor velocity. Servo motors use the same PWM signal but instead control the angle of a motor and are used for various types of actuators, such as robot arms or steering systems. Finally, it is useful to have onboard data storage for vehicle parameter information. A common inexpensive non-volatile memory device is the EEPROM , typically available in the Kbit range. Many autonomous systems rely on remote manual control through serial radio receivers. Other forms of radio control are possible but most modern systems utilize serial data streams. Other radios are used to communicate from the vehicle to ground control systems. These radios typically use a serial protocol. Another form of communication is supported through a serial to USB converter. This can be used as a debug port or to transmit data to an external computer. Finally, the microprocessor is programmed using the Microchip PICkit 3/4 serial programmer.

A summary of the basic sensors and peripherals supported by the OSAVC and their respective hardware interfaces is found in Table 3.1. Every sensor has a physical connector and there are nearly as many connector types as there are sensor types. After a review of the most common connectors we selected the Molex Picoblade for the OSAVC. It is a good compromise between footprint and mechanical reliability. It has 1mm pitch between conductors to minimize size and uses through hole pins for connection to the PCB, making it more reliable than surface mount equivalents, and easier to assemble. Because this research is primarily open source, the tools used for development need to be open source as well; we used the KiCad electrical design automation suite3 for the electrical and PCB layout design. The first design decision before embarking on the electrical design was the choice of microcontroller. we selected a microcontroller that satisfied the requirements listed in the Chapter 2, the Microchip PIC32MX795 series microcontroller, a 32 bit MIPSbased processor. This device includes a wide suite of hardware peripherals including numerous UARTs, SPI ports, I2C ports, IC blocks, OC blocks, and timers. It allows for CAN bus integration with the inclusion of an external CAN transceiver. It operates at a reasonably fast 80 MHz clock frequency, has 128 Kb SRAM and 512 Kb flash memory, is a mature design, and is well supported by documentation and a functional integrated development environment called MPLabX. The PIC32MX795 was offered in a development board which we acquired to begin developing the code base for the controller and for use as a reference design for the OSAVC. The basic requirements for the microcontroller operation are decoupling capacitors on all the voltage input and reference pins, a reset connection to the MCLR pin, connections to the programming interface, and the oscillator pins. Although the microcontroller may operate without an external oscillator for precise and stable timing it is recommended to use a crystal oscillator. We selected an 8 MHz oscillator with 30 pF capacitors, and a 0 Ohm resistor to allow for attenuation of the oscillator signal if required. To reset the microcontroller, we implemented a manual push button switch, as well as following the guidelines for the programmer reset function. This is shown in Fig. 3.3. In addition to the basic requirements an FTDI serial to USB converter chip is connected to the first UART port of the microcontroller to allow for communication to an external device. This feature is primarily used for debugging purposes during development, as well as communication to a single board computer or ground control station during normal operation. This is detailed in the microprocessor sheet of the schematics4 . The microcontroller requires a stable 3.3V power supply, provided by the Texas Instruments LP38690DT-3.3 low dropout voltage regulator. Many sensors and peripherals require 5V operation, and the LP38690DTX-5.0 LDO regulator provides this capability. Because the OSAVC may provide power to an external SBC as well as some high current devices such as servo motors, a Microchip 29300-5.0 5V/3A LDO regulator is used. Finally, the TI PTN78020W switching regulator accepts battery volt-ages in the range of 7-36V and regulates down to 7V/6A, and feeds the two 5V LDO regulators. The switching regular is used because it is very efficient—above 90%—and allows for reducing high battery voltages without wasting energy in the form of heat. The output of the LP38690DTX-5 in turn provides power to the 3.3V LDO.

Alternatively, hydroponic nft system the USB port can power the LP38690DTX-5 and LP38690DT-3.3, typically used when developing and testing firmware. This is switched by a P-channel MOSFET transistor using a voltage divider and comparator circuit when USB power is present detailed in Fig. 3.4. It can also be found in the power section of the schematics. The peripherals supported by the OSAVC are listed in Table 3.1. LEDs indicating communication were placed on signal lines for most sensors5 as well as to indicate the operation of the various voltage sources. A jumper is provided to power the OC modules with the 29300-5.0 and the SBC with up to 3A current at 5V when operated with a battery. The GPIO pins have Schottky diodes to protect the microcontroller from electrostatic discharge events. The detailed design is located in the I/O sheet of the schematics. The guiding principles for the PCB layout balanced phsyical size with manufacturability. Because the design is open source as opposed to a commercial product, we cannot guarantee that an adopter will have access to a reflow oven for soldering components to the PCB. Therefore the design has to support manual soldering while also minimizing board area. Thus, we selected surface mount devices —in order to save board space—that were still possible to solder by hand. As a result, the smallest discrete devices in the design come in the 0603 package, with a footprint of approximately 1.55 by 0.85 mm. For the microcontroller, we selected the TQFP-100 package, which has leads on a 0.5 mm pitch and occupies a 14 mm by 14 mm footprint. we made similar choices for the other components. To ease the assembly all the components are located on the top side of the PCB. For the PCB itself, we also balanced cost vs size by choosing a four layer board. The PCB has two signal planes , an internal ground plane, and an internal 3.3V plane. This design provides some noise immunity by having these mostly complete internal copper planes.we chose to mount the switching power supply on the PCB despite its large size in order to minimize the mechanical complexity. The board could have been made much smaller by placing the power supply separately, but we deemed the convenience of a single PCB worth the tradeoff. The top signal plane and silkscreen of the PCB is shown in Fig. 3.5. For the following discussion refer to the physical board of Fig. 3.6 where the silkscreen designations are easier to see. For the component layout, we chose to have the battery connection enter the PCB from a pair of mounting holes sized for 16 AWG wires on the lower left hand side . Mounted directly adjacent is the PTN78020W . The three LDOs are located along the top and right hand sides of the PTN78020W , and a USB-C power output is located on the upper left hand corner of the PCB . Also on the left hand edge are the motor outputs and GPIO pins located on a 19 by 3 row header. On the top and bottom edges of the PCB are the sensor and peripheral connectors . The microcontroller is located near the center of the PCB . The oscillator is located adjacent to the microcontroller to keep the signal traces short and of nearly equal path length. The EEPROM is located on the lower right of the PCB . On the upper right is the FTDI serial-USB converter which connects to the outside world on the right hand edge of the PCB . The reset button and the in-circuit serial programming port are also located on the right hand edge of the PCB. Refer to the schematics for the location of the various discrete components. For most signals we selected 0.25 mm trace widths matching the lead width of the microcontroller. For higher current carrying traces, such as those from the voltage regulators or battery, we chose traces of at least 1 mm in width—well above the minimum width recommended by the KiCad calculator—in order to minimize resistive losses and to keep the traces as cool as possible. Signal path crossings between the top signal and bottom signal layers were kept as close to perpendicular as was possible to eliminate coupling between signals. There are several tests to perform prior to attempting to load code onto the OSAVC. These tests ensure that the assembly was performed correctly. The first test is to plug a USB-B cable from a computer to the matching receptacle on the OSAVC. This should provide power to the board and the LED from the 3.3V LDO should light up. This indicates that the USB power is succesfully delivered to the regulator and therefore the USB connnector is connected.

The non-exposed side of a sunburned cluster often develops normally

In almost all viral diseases occurring in the vineyard, the virus is distributed systemically throughout the grapevine. Once introduced in the host, viral particles move rapidly within the vascular tissue towards sink tissues and establish infections . Although we detected the presence of GRBaV in vegetative and berry tissues during growing and harvest seasons, symptoms of red blotch were only evident after véraison, which suggests that the disease onset is mostly dependent on grapevine phenology and not necessarily linked to viral accumulation. Similar observations have been made during grapevine leaf roll disease, supporting the hypothesis that the appearance of viral disease symptoms in the vineyard may result from the interaction between pathogen and host cellular factors at specific phenological stages . Whether GRBaV is able to modulate its infection strategy as a function of plant development and/ or grapevines have distinct responses to red blotch throughout the season remains to be resolved. GRBaV shares several similarities with geminiviruses, stacking pots including a small single stranded DNA genome that encodes six potential proteins .

Because of their limited protein-coding capacities, geminiviruses rely heavily on host cellular machinery and interact with an assortment of plant proteins and pathways to promote infection . We confirmed the expression of five GRBaV genes in ripening red-skinned berries. Although three of these genes have been assigned putative functions in viral DNA replication and coat formation , their specific functions in pathogenesis are yet to be elucidated. Our results indicated that the developmental stage of the berries may not influence the expression of GRBaV viral genes and that host factors could play a more critical role in the establishment of successful infections. Red blotch symptoms in grape berries include abnormal chemical composition and asynchronous ripening in the clusters , both reflecting alterations in host metabolic homeostasis and developmental processes. Interestingly, we determined that GRBaV infections induced some processes associated with early fruit development in berries at late stages of ripening, while repressing pathways involved in fruit ripening . Abiotic stress responses to hypoxia and temperature were also suppressed by red blotch in grape berries. These observations may imply that the virus, as a bio-trophic pathogen, could redirect host metabolic processes to sustain higher energy demands due to viral replication and at the same time suppressing ripening related events and responses to stress , potentially counterproductive to viral infections. However, further evidence using infected berries from different grape cultivars and environmental conditions will be necessary to understand how both grapevine genotype and environment may influence the disease outcome.

It is also important to consider that the effects of GRBaV infections on berries may not be comparable with those occurring in vegetative tissues; for instance, photosynthetic pathways are generally inhibited during viral infections of grape leaves . GRBaV infections restricted the biosynthesis and accumulation of phenylpropanoids and derivatives, which preferentially accumulate after véraison in red-skinned berries. These secondary metabolites function as antioxidants and phytoalexins to protect the berries against a variety of stresses, and are important contributors of berry quality parameters, such as color, flavor, and aroma . The inhibition of phenylpropanoid metabolism appears to be a hallmark of viral infections in red-skinned berries, as has previously been reported in leaf roll-affected berries . In particular, the anthocyanin biosynthetic pathway was greatly impaired as a result of leaf roll and red blotch, correlating with the reduced coloration observed in GRBaVinfected berries from several red-skinned cultivars . In this study, we demonstrated that GRBaV infections compromised the regulation of ripening by: suppressing specific ripening events; altering the expression patterns of transcription factors that control the transition from the growth to ripening phases and the activation of ripening pathways ; and causing hormonal imbalances. Most of the alterations in the ripening regulatory networks occurred in infected berries at véraison, the same developmental time when red blotch symptoms initiated, suggesting a link between mechanisms involved in the control of grapevine responses to viruses and berry development. Similar observations were made in leaf roll-affected berries, which presented lower expression levels of MYB transcription factors at late stages of ripening .

Plant hormones modulate ripening processes and stress responses in grape berries. Red blotch had a profound impact on ABA, ethylene, and auxin pathways. ABA is considered the triggering signal of berry ripening, since its accumulation coincides with véraison and ABA responsive transcription factors have been implicated in the activation of ripening processes . Particularly, the induction of anthocyanin biosynthesis in a variety of grape cultivars has been linked to ABA-mediated signaling pathways . Our results indicate that alterations of ripening events in the GRBaV-infected berries, including the reduced anthocyanin content at late stages of ripening, could be a direct result of lower ABA levels at véraison. ABA has been shown to stimulate ethylene-mediated pathways in berries, and together both hormones appear to regulate the progression of ripening . GRBaV infections also affected genes involved in ethylene biosynthesis and responses , which could further account for the antagonistic effect of red blotch on ripening events and immune responses. In contrast, red blotch promoted auxin-mediated pathways, known to suppress berry ripening. Auxins play crucial roles in the early development of grape berries and are known to inhibit ripening processes by delaying ABA-triggered processes . The mechanisms by which grapevine viruses cause disease in ripening berries need to be investigated. GRBaV may actively interfere with the regulation of berry ripening by hijacking the plant post-transcriptional control. We identified elements of the host post-transcriptional machinery that were misregulated in GRBaV-infected berries. Post-transcriptional regulation intersects plant immune responses, developmental transitions, and hormone signaling . Plant viruses, in particular geminiviruses, encode multiple silencing suppressors that interfere with host siRNA production and alter plant DNA methylation and miRNA pathways, causing developmental defects . A previous study on leaf roll indicated that the viral infection caused up-regulation of Dicer-like genes in ripening berries . Therefore, the relationship between the viral-induced repression of host RNA silencing processes and the post-transcriptional regulation of ripening should be addressed from the perspective of compatible grapevine– virus interactions.Shriveled berries on ripening clusters are not uncommon in California vineyards. They usually occur in only a small proportion of a vineyard’s fruit , nft hydroponic but in particular vineyards and years, shriveling can affect more than half of the crop . Most shrivel disorders make the fruit less desirable for winemaking, with subsequent yield and production losses. Before taking steps to reduce the incidence of fruit shriveling in vineyards, it is necessary to differentiate between shrivel disorders. We describe four common causes of fruit shriveling and detail compositional differences between normally developing fruit and that affected by sugar accumulation disorder .Fruit exposed to direct sunlight for all or part of the day, especially in the heat of the afternoon, can be damaged by sunburn, which may be caused by high temperature, ultraviolet radiation or a combination of the two . The physical appearance of sunburned fruit depends on the grape variety and stage of development — white grapes and red grapes exposed before pigment accumulation begins develop brown discoloration, which varies depending on severity.Veraison and early postveraison red varieties with sunburn often exhibit poor color development, and may remain pink for the remainder of the season. Post-veraison sunburn leads to fruit with less color and a shiny appearance. Sunburned berries often crack, presumably due to damaged epidermal tissues. Extreme sunburn leads to complete berry desiccation and the formation of raisins in both red and white varieties. Sunburn only affects berries that are directly exposed to sunlight. If a cluster is fully exposed to the sun on both sides, or if the rachis itself is damaged, then the cluster may be completely affected.

Obvious signs of sunburn may only occur on the exposed portions of individual berries. Sunburn can be avoided by reducing the fruit’s exposure to direct sunlight, especially in the afternoon. While leaves are removed in the fruit zone in many growing regions to increase cluster exposure to indirect light, in north-south row orientations leaves are removed on the east side of the canopy to reduce direct exposure in the afternoon and the probability of sunburn. This practice does not completely eliminate the risk of sunburn, however, because morning sun can also cause damage.Natural dehydration is another type of shrivel that may affect berries late in ripening but prior to commercial harvest. These berries appear similar to fruit with bunch stem necrosis, but the rachis look green and healthy. For this type of shrivel, which is especially pronounced in Syrah , berries lose weight due to water loss, and sugars are concentrated . Both increased transpiration and decreased phloem influx have been suggested as causes for late-season dehydration, but recent studies provide evidence that several varieties of grape berries remain hydraulically connected to the parent vine and therefore may lose water back to the parent plant late in ripening as well as to dry, ambient air .Clusters affected by bunch stem necrosis are identified by necrotic rachis tissue, with shriveled berries distal to the necrotic tissue. The visible symptoms of bunch stem necrosis begin as small black spots on pedicels , and progress to the lateral stem structure and rachis . Usually, necrosis symptoms are not noted until the rachis is affected. bunch stem necrosis may affect an entire cluster as well as the wings and tips of otherwise healthy clusters . It can occur in many varieties, but is especially prevalent in Cabernet Sauvignon on California’s North Coast. It has been described in the literature in many different countries, with descriptive terms that include waterberry , bunch stem dieback , shanking , stiellähme , palo negro , desséchement de la rafl e and dessichimiento della rachide . No specifi c cause of bunch stem necrosis has been identifi ed, despite many years of research. In some cases, varietal differences in susceptibility have been correlated to xylem structure, specifically a reduction on the area of xylem distal to branch points in the peduncle . The incidence of bunch stem necrosis has also been correlated to various concentrations or ratios of mineral nutrients, including magnesium, calcium, potassium and nitrogen . Work in Chile and Australia has shown that the amino acid metabolite putrescine is associated with bunch stem necrosis. More light in the canopy can also reduce bunch stem necrosis . bunch stem necrosis can appear very early in fruit development or after veraison. The terms “inflorescence necrosis” and “early bunch stem necrosis” have been used to describe bunch stem necrosis around bloom . The composition of such fruit varies depending on when during fruit development the rachis becomes necrotic. Presumably, the necrosis prevents both sugar and water transport to the berry. Hence, if the rachis becomes necrotic early in the ripening period before the berry has accumulated much sugar, fruit will have low Brix . On the other hand, if the rachis becomes necrotic after the berries have accumulated appreciable sugar, subsequent shriveling can concentrate the sugars. bunch stem necrosis in Cabernet Sauvignon on the North Coast is usually the latter type. Fruit with bunch stem necrosis can have a Brix as high as 42 .Another disorder with symptoms that occur during the ripening period has been called “berry shrivel”; we recently proposed that it be called “sugar accumulation disorder” . This disorder was first described in Emperor table grapes from California’s San Joaquin Valley and is characterized by poor coloration and low sugar accumulation. Sugar accumulation disorder has been found in a number of varieties and is present in many areas of California. In general, it affects only a small proportion of clusters in a vineyard, though in certain years and vineyards up to 50% of the fruit can be affected. Regardless of the variety or location, fruit affected by sugar accumulation disorder has lower pH, berry weight and Brix compared with normally developing fruit . When multiple rachises and fruit with sugar accumulation disorder were tested for minerals, the only consistent difference from normally developing fruit or rachises was increased calcium in the rachis tissue . To test the hypothesis that fruit exhibiting sugar accumulation disorder may have altered nitrogen metabolism, we measured the amounts of nitrogenous compounds at harvest in fruit with the disorder compared to normally developing fruit.